Variant report

Variant	rs117907419
Chromosome Location	chr6:24774178-24774179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24706431..24709046-chr6:24773872..24777096,3	K562	blood:
2	chr6:24718549..24722818-chr6:24771512..24777723,8	MCF-7	breast:
3	chr6:24666490..24670247-chr6:24774150..24780460,9	K562	blood:
4	chr6:24711892..24724164-chr6:24769415..24786834,81	K562	blood:
5	chr6:24493803..24496211-chr6:24773975..24776646,3	K562	blood:
6	chr6:24715365..24725462-chr6:24770390..24783002,86	K562	blood:
7	chr6:24717870..24723661-chr6:24773711..24778808,16	MCF-7	breast:
8	chr6:24665480..24670247-chr6:24773496..24779775,9	K562	blood:
9	chr6:24705180..24707870-chr6:24773614..24775393,3	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000272402	Chromatin interaction
ENSG00000111802	Chromatin interaction
ENSG00000112294	Chromatin interaction
ENSG00000112308	Chromatin interaction
ENSG00000112304	Chromatin interaction
ENSG00000112293	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv5227	chr6:24774149-24824012	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24760400-24775000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:24765400-24774400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24767000-24774600	Weak transcription	Stomach Mucosa	stomach
4	chr6:24768800-24774200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:24771800-24774600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:24772200-24774400	Weak transcription	Hela-S3	cervix
7	chr6:24772200-24774600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:24773000-24774600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:24773400-24774600	Weak transcription	Fetal Heart	heart
10	chr6:24773800-24774200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:24773800-24774200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:24773800-24774400	Enhancers	HepG2	liver
13	chr6:24774000-24774200	Flanking Active TSS	K562	blood
14	chr6:24774000-24774400	Weak transcription	GM12878-XiMat	blood
15	chr6:24774000-24774600	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:24774000-24774600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:24774000-24775000	Flanking Active TSS	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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