Variant report

Variant	nsv5227
Chromosome Location	chr6:24774149-24824012
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1016)
CpG islands
(count:550)
Chromatin interactive
region (count:41)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:1016 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:24809893-24810343	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:24779569-24780151	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:24774756-24776138	HepG2	liver:	n/a	chr6:24775560-24775568
4	ARID3A	chr6:24774568-24775478	K562	blood:	n/a	n/a
5	ARID3A	chr6:24776751-24777432	HepG2	liver:	n/a	n/a
6	ARID3A	chr6:24799223-24799276	HepG2	liver:	n/a	n/a
7	ARID3A	chr6:24803165-24804029	HepG2	liver:	n/a	n/a
8	ARID3A	chr6:24805031-24805236	HepG2	liver:	n/a	n/a
9	ATF2	chr6:24779556-24780199	GM12878	blood:	n/a	n/a
10	ATF2	chr6:24775089-24775574	GM12878	blood:	n/a	n/a
11	ATF2	chr6:24779530-24780057	GM12878	blood:	n/a	n/a
12	ATF2	chr6:24775075-24775716	GM12878	blood:	n/a	n/a
13	ATF3	chr6:24775082-24775499	HepG2	liver:	n/a	n/a
14	ATF3	chr6:24774978-24775426	H1-hESC	embryonic stem cell:	n/a	n/a
15	BACH1	chr6:24775521-24775788	H1-hESC	embryonic stem cell:	n/a	n/a
16	BACH1	chr6:24822296-24822655	K562	blood:	n/a	chr6:24822469-24822483
17	BACH1	chr6:24775379-24775381	K562	blood:	n/a	n/a
18	BACH1	chr6:24822328-24822607	H1-hESC	embryonic stem cell:	n/a	chr6:24822469-24822483
19	BCL3	chr6:24779631-24780084	GM12878	blood:	n/a	n/a
20	BCL3	chr6:24775014-24775573	A549	lung:	n/a	chr6:24775359-24775368 chr6:24775456-24775469
21	BCL3	chr6:24787903-24788774	K562	blood:	n/a	n/a
22	BCLAF1	chr6:24774660-24775889	GM12878	blood:	n/a	chr6:24775359-24775368 chr6:24775456-24775469 chr6:24775571-24775580
23	BHLHE40	chr6:24774922-24776197	HepG2	liver:	n/a	n/a
24	BHLHE40	chr6:24810053-24810239	HepG2	liver:	n/a	n/a
25	BHLHE40	chr6:24774567-24776164	K562	blood:	n/a	n/a
26	BHLHE40	chr6:24779733-24780176	GM12878	blood:	n/a	n/a
27	BHLHE40	chr6:24774858-24776016	GM12878	blood:	n/a	n/a
28	BRCA1	chr6:24819362-24819508	Hela-S3	cervix:	n/a	n/a
29	BRCA1	chr6:24775066-24775625	HepG2	liver:	n/a	n/a
30	BRCA1	chr6:24779818-24779993	GM12878	blood:	n/a	n/a
31	BRCA1	chr6:24809928-24810257	HepG2	liver:	n/a	n/a
32	BRCA1	chr6:24774857-24776299	Hela-S3	cervix:	n/a	n/a
33	BRCA1	chr6:24774806-24775917	H1-hESC	embryonic stem cell:	n/a	n/a
34	CBX3	chr6:24774421-24776308	K562	blood:	n/a	n/a
35	CCNT2	chr6:24788489-24789017	K562	blood:	n/a	n/a
36	CCNT2	chr6:24774916-24775861	K562	blood:	n/a	chr6:24775148-24775157 chr6:24775105-24775114
37	CCNT2	chr6:24778557-24778623	K562	blood:	n/a	n/a
38	CEBPB	chr6:24807518-24807817	K562	blood:	n/a	n/a
39	CEBPB	chr6:24779599-24780060	Hela-S3	cervix:	n/a	chr6:24779970-24779981
40	CEBPB	chr6:24778627-24778847	HepG2	liver:	n/a	chr6:24778680-24778691
41	CEBPB	chr6:24775669-24776362	IMR90	lung:	n/a	n/a
42	CEBPB	chr6:24780611-24780904	A549	lung:	n/a	chr6:24780729-24780738 chr6:24780727-24780740 chr6:24780729-24780738 chr6:24780729-24780738
43	CEBPB	chr6:24803093-24803470	HepG2	liver:	n/a	chr6:24803283-24803294
44	CEBPB	chr6:24822126-24822427	Hela-S3	cervix:	n/a	chr6:24822269-24822280
45	CEBPB	chr6:24780560-24780893	K562	blood:	n/a	chr6:24780729-24780738 chr6:24780727-24780740 chr6:24780729-24780738 chr6:24780729-24780738
46	CEBPB	chr6:24789092-24789414	K562	blood:	n/a	chr6:24789243-24789254
47	CEBPB	chr6:24807622-24807697	Hela-S3	cervix:	n/a	n/a
48	CEBPB	chr6:24807566-24808017	A549	lung:	n/a	n/a
49	CEBPB	chr6:24822921-24823304	IMR90	lung:	n/a	n/a
50	CEBPB	chr6:24807624-24808157	HepG2	liver:	n/a	n/a

(count:550 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:24774877-24774927	GM19239	blood:	n/a
2	chr6:24774877-24774927	GM19239	blood:	n/a
3	chr6:24774933-24774983	GM12892	blood:	n/a
4	chr6:24776063-24776113	PFSK-1	brain:	n/a
5	chr6:24775011-24775061	AoSMC	blood vessel:	n/a
6	chr6:24775229-24775279	HRPEpiC	eye:	n/a
7	chr6:24775480-24775530	U87	brain:	n/a
8	chr6:24774877-24774927	NT2-D1	testis:	n/a
9	chr6:24775647-24775697	HRPEpiC	eye:	n/a
10	chr6:24775566-24775616	H1-hESC	embryonic stem cell:	embryo
11	chr6:24775480-24775530	Hepatocyte	liver:	n/a
12	chr6:24775566-24775616	MCF-7	breast:	n/a
13	chr6:24774877-24774927	Hela-S3	cervix:	n/a
14	chr6:24776063-24776113	HRPEpiC	eye:	n/a
15	chr6:24775229-24775279	PANC-1	pancreas:	n/a
16	chr6:24774877-24774927	AG09319	gingival:	n/a
17	chr6:24774963-24775013	AoSMC	blood vessel:	n/a
18	chr6:24774877-24774927	HEK293	kidney:	embryo
19	chr6:24775566-24775616	MCF10A-Er-Src	breast:	n/a
20	chr6:24776063-24776113	HEK293	kidney:	embryo
21	chr6:24775011-24775061	HIPEpiC	eye:	n/a
22	chr6:24775229-24775279	LNCaP	prostate:	n/a
23	chr6:24775480-24775530	BE2_C	brain:	n/a
24	chr6:24774963-24775013	NHDF-neo	bronchial:	n/a
25	chr6:24775229-24775279	NB4	blood:	n/a
26	chr6:24774933-24774983	HEEpiC	esophagus:	n/a
27	chr6:24775480-24775530	GM12892	blood:	n/a
28	chr6:24775647-24775697	CMK	blood:	n/a
29	chr6:24775566-24775616	GM19239	blood:	n/a
30	chr6:24774933-24774983	Hepatocyte	liver:	n/a
31	chr6:24775011-24775061	SK-N-SH_RA	brain:	n/a
32	chr6:24776063-24776113	NT2-D1	testis:	n/a
33	chr6:24774933-24774983	MCF-7	breast:	n/a
34	chr6:24776063-24776113	SKMC	muscle:	n/a
35	chr6:24775480-24775530	T-47D	breast:	n/a
36	chr6:24775647-24775697	GM12891	blood:	n/a
37	chr6:24776063-24776113	ProgFib	skin:	n/a
38	chr6:24774933-24774983	HAEpiC	amniotic membrane:	n/a
39	chr6:24775647-24775697	A549	lung:	n/a
40	chr6:24775011-24775061	LNCaP	prostate:	n/a
41	chr6:24775480-24775530	MCF-7	breast:	n/a
42	chr6:24774963-24775013	NB4	blood:	n/a
43	chr6:24775647-24775697	HPAEpiC	pulmonary alveolar:	n/a
44	chr6:24774877-24774927	HEEpiC	esophagus:	n/a
45	chr6:24774963-24775013	RPTEC	kidney:	n/a
46	chr6:24775480-24775530	SK-N-SH	brain:	n/a
47	chr6:24775011-24775061	GM19239	blood:	n/a
48	chr6:24774877-24774927	HCPEpiC	choroid plexus:	n/a
49	chr6:24774933-24774983	HIPEpiC	eye:	n/a
50	chr6:24775229-24775279	ovcar-3	ovarian:	n/a

(count:41 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:24822460..24825391-chr6:24831977..24834019,3	K562	blood:
2	chr6:24720710..24723407-chr6:24785225..24788123,2	MCF-7	breast:
3	chr6:24666490..24670247-chr6:24774150..24780460,9	K562	blood:
4	chr6:24823372..24825596-chr6:24828609..24830674,2	MCF-7	breast:
5	chr6:24798986..24801269-chr6:24807888..24810303,2	K562	blood:
6	chr6:24720478..24722311-chr6:24779195..24782638,3	MCF-7	breast:
7	chr6:24706431..24709046-chr6:24773872..24777096,3	K562	blood:
8	chr6:24798986..24801269-chr6:24807888..24810303,2	K562	blood:
9	chr6:24790472..24792948-chr6:24795199..24797011,2	MCF-7	breast:
10	chr6:24719711..24722073-chr6:24797818..24801450,3	K562	blood:
11	chr6:24720760..24722445-chr6:24809512..24811592,2	K562	blood:
12	chr6:24715365..24725462-chr6:24770390..24783002,86	K562	blood:
13	chr6:24790472..24792948-chr6:24795199..24797011,2	MCF-7	breast:
14	chr6:24795220..24796960-chr6:24798718..24801409,2	K562	blood:
15	chr6:24707645..24711659-chr6:24779375..24784848,6	K562	blood:
16	chr6:24705180..24707870-chr6:24773614..24775393,3	K562	blood:
17	chr6:24760069..24763397-chr6:24777478..24780398,3	K562	blood:
18	chr6:24704323..24706405-chr6:24780403..24782969,2	K562	blood:
19	chr6:24781477..24783859-chr6:24794716..24796721,2	MCF-7	breast:
20	chr6:24699907..24702798-chr6:24778653..24782809,3	K562	blood:
21	chr6:24522066..24523918-chr6:24775174..24778168,2	K562	blood:
22	chr6:24711892..24724164-chr6:24769415..24786834,81	K562	blood:
23	chr6:24778637..24781525-chr6:24789510..24791363,2	MCF-7	breast:
24	chr17:7482194..7483174-chr6:24774784..24775711,2	NB4	blood:
25	chr6:24710064..24711659-chr6:24781117..24783754,2	K562	blood:
26	chr6:24800674..24802210-chr6:24805500..24807230,2	K562	blood:
27	chr6:24493803..24496211-chr6:24773975..24776646,3	K562	blood:
28	chr6:24773976..24777184-chr6:24777863..24780331,3	MCF-7	breast:
29	chr6:24717680..24720837-chr6:24785790..24788672,4	K562	blood:
30	chr6:24778637..24781525-chr6:24789510..24791363,2	MCF-7	breast:
31	chr6:24774701..24778570-chr6:24781461..24784922,5	MCF-7	breast:
32	chr6:24794462..24796300-chr6:24800583..24803323,2	K562	blood:
33	chr6:24718549..24722818-chr6:24771512..24777723,8	MCF-7	breast:
34	chr6:24714787..24716886-chr6:24784386..24786404,4	MCF-7	breast:
35	chr6:24794462..24796300-chr6:24800583..24803323,2	K562	blood:
36	chr6:24781477..24783859-chr6:24794716..24796721,2	MCF-7	breast:
37	chr6:24800674..24802210-chr6:24805500..24807230,2	K562	blood:
38	chr6:24717870..24723661-chr6:24773711..24778808,16	MCF-7	breast:
39	chr6:24774752..24775406-chr7:100486913..100487602,2	HCT-116	colon:
40	chr6:24665480..24670247-chr6:24773496..24779775,9	K562	blood:
41	chr6:24822296..24824973-chr6:24834400..24836585,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACOT13-2	chr6:24777450-24777964	NONHSAT108124
2	lnc-ACOT13-2	chr6:24775177-24775340	NONHSAT108124

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	GMNN	hsa-miR-449a	chr6:24786043-24786065
2	GMNN	hsa-miR-449b-5p	chr6:24786043-24786065

Variant related genes	Relation type
C6orf229	TF binding region
GMNN	TF binding region
FAM65B	TF binding region
C6orf229	CpG island
GMNN	CpG island
FAM65B	CpG island
ENSG00000112304	chromatin interactions
ENSG00000129226	chromatin interactions
ENSG00000272402	chromatin interactions
ENSG00000111913	chromatin interactions
ENSG00000112312	chromatin interactions
ENSG00000272345	chromatin interactions
ENSG00000260286	chromatin interactions
ENSG00000112308	chromatin interactions
ENSG00000112294	chromatin interactions
ENSG00000176125	chromatin interactions
ENSG00000112293	chromatin interactions
ENSG00000111802	chromatin interactions

Extended variants
information (count: 1676 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:1676 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191148021	chr6:24774177-24774178	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
2	rs117907419	chr6:24774178-24774179	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
3	rs368029838	chr6:24774186-24774187	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
4	rs371559782	chr6:24774246-24774247	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
5	rs73396407	chr6:24774297-24774298	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs369552385	chr6:24774374-24774375	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
7	rs78808843	chr6:24774450-24774451	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
8	rs372863912	chr6:24774470-24774471	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
9	rs371318449	chr6:24774482-24774483	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
10	rs569203057	chr6:24774522-24774523	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
11	rs377277733	chr6:24774546-24774547	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
12	rs369804841	chr6:24774564-24774565	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
13	rs9356946	chr6:24774569-24774570	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
14	rs9379688	chr6:24774578-24774579	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs62400831	chr6:24774598-24774599	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
16	rs566915836	chr6:24774600-24774601	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
17	rs78417463	chr6:24774612-24774613	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
18	rs182121245	chr6:24774623-24774624	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
19	rs528384740	chr6:24774624-24774625	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
20	rs186667961	chr6:24774634-24774635	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
21	rs191695508	chr6:24774684-24774685	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
22	rs375456282	chr6:24774716-24774717	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
23	rs543613460	chr6:24774718-24774719	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
24	rs183274334	chr6:24774784-24774785	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
25	rs187545826	chr6:24774793-24774794	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
26	rs189893886	chr6:24774794-24774795	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
27	rs72837775	chr6:24774872-24774873	Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
28	rs561845379	chr6:24774981-24774982	Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
29	rs576609399	chr6:24775005-24775006	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
30	rs544201800	chr6:24775012-24775013	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
31	rs139367434	chr6:24775063-24775064	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
32	rs529769608	chr6:24775069-24775070	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
33	rs539926590	chr6:24775078-24775079	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
34	rs559957953	chr6:24775121-24775122	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
35	rs532172893	chr6:24775138-24775139	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
36	rs9467305	chr6:24775150-24775151	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs2754775	chr6:24775181-24775182	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs141507685	chr6:24775214-24775215	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
39	rs548586398	chr6:24775233-24775234	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
40	rs568441842	chr6:24775235-24775236	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
41	rs182168110	chr6:24775269-24775270	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
42	rs547901086	chr6:24775289-24775290	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
43	rs3756812	chr6:24775306-24775307	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs9467306	chr6:24775324-24775325	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
45	rs80050204	chr6:24775334-24775335	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
46	rs74667077	chr6:24775352-24775353	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
47	rs199829688	chr6:24775391-24775392	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
48	rs556438847	chr6:24775404-24775405	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
49	rs377392444	chr6:24775406-24775407	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
50	rs535755621	chr6:24775425-24775426	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Osteosarcoma	16790693	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
Burkitt''s lymphoma	19759907	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Bladder cancer	16790693	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Lung cancer	19153074	CNVD
Breast cancer	21364760	CNVD
Cancer	21183584	CNVD
Myelofibrosis	22110671	CNVD
Williams-beuren syndrome	16971481	CNVD
Uveal melanoma	20484589	CNVD
small cell lung cancer	20016488	CNVD
Pancreatic cancer	17952125	CNVD
Primary hepatocellular	22912832	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1279 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24760400-24775000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:24765400-24774400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24767000-24774600	Weak transcription	Stomach Mucosa	stomach
4	chr6:24768800-24774200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:24771800-24774600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:24772200-24774400	Weak transcription	Hela-S3	cervix
7	chr6:24772200-24774600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:24773000-24774600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:24773400-24774600	Weak transcription	Fetal Heart	heart
10	chr6:24773800-24774200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:24773800-24774200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:24773800-24774400	Enhancers	HepG2	liver
13	chr6:24774000-24774200	Flanking Active TSS	K562	blood
14	chr6:24774000-24774400	Weak transcription	GM12878-XiMat	blood
15	chr6:24774000-24774600	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:24774000-24774600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:24774000-24775000	Flanking Active TSS	Dnd41	blood
18	chr6:24774200-24774400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:24774200-24774400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr6:24774200-24774400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr6:24774200-24774400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:24774200-24774400	Enhancers	Brain Germinal Matrix	brain
23	chr6:24774200-24774600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:24774200-24774600	Enhancers	Primary B cells from cord blood	blood
25	chr6:24774200-24774600	Active TSS	Primary T cells from cord blood	blood
26	chr6:24774200-24774600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:24774200-24774600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:24774200-24774600	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr6:24774200-24774600	Active TSS	Monocytes-CD14+_RO01746	blood
30	chr6:24774200-24776000	Active TSS	Duodenum Mucosa	Duodenum
31	chr6:24774200-24776600	Active TSS	Fetal Brain Female	brain
32	chr6:24774200-24777000	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr6:24774200-24778200	Active TSS	K562	blood
34	chr6:24774400-24774600	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr6:24774400-24774600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr6:24774400-24774600	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr6:24774400-24774600	Enhancers	Primary B cells from peripheral blood	blood
38	chr6:24774400-24774600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr6:24774400-24774600	Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr6:24774400-24774600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:24774400-24774600	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr6:24774400-24774600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr6:24774400-24774600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:24774400-24774600	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr6:24774400-24774600	Active TSS	Fetal Thymus	thymus
46	chr6:24774400-24774600	Enhancers	GM12878-XiMat	blood
47	chr6:24774400-24774600	Enhancers	Hela-S3	cervix
48	chr6:24774400-24774600	Active TSS	HepG2	liver
49	chr6:24774400-24774600	Enhancers	HUVEC	blood vessel
50	chr6:24774400-24775000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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