Variant report

Variant	rs377277733
Chromosome Location	chr6:24774546-24774547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:24774467-24776165	K562	blood:	n/a	n/a
2	RCOR1	chr6:24774284-24776344	K562	blood:	n/a	n/a
3	POLR2A	chr6:24774467-24776232	K562	blood:	n/a	n/a
4	MXI1	chr6:24774525-24777099	SK-N-SH	brain:	n/a	n/a
5	TRIM28	chr6:24774539-24776199	K562	blood:	n/a	n/a
6	NR2F2	chr6:24774378-24776400	K562	blood:	n/a	chr6:24775017-24775032
7	CUX1	chr6:24774235-24775529	K562	blood:	n/a	n/a
8	POLR2A	chr6:24774495-24776115	SK-N-MC	brain:	n/a	n/a
9	NR2F2	chr6:24774504-24775649	K562	blood:	n/a	chr6:24775017-24775032
10	HA-E2F1	chr6:24774441-24776150	MCF-7	breast:	n/a	chr6:24775561-24775572 chr6:24775560-24775571 chr6:24775561-24775569 chr6:24775561-24775569 chr6:24775560-24775570 chr6:24775659-24775668 chr6:24775561-24775568 chr6:24775558-24775575 chr6:24775091-24775100 chr6:24775562-24775576
11	POLR2A	chr6:24774458-24776185	K562	blood:	n/a	n/a
12	CBX3	chr6:24774421-24776308	K562	blood:	n/a	n/a
13	ZNF384	chr6:24774433-24775410	K562	blood:	n/a	n/a
14	TEAD4	chr6:24774522-24776335	K562	blood:	n/a	n/a
15	TBP	chr6:24774520-24776166	K562	blood:	n/a	chr6:24775943-24775954
16	POLR2A	chr6:24774494-24776259	GM12891	blood:	n/a	n/a
17	IRF1	chr6:24774217-24776197	K562	blood:	n/a	chr6:24775144-24775158 chr6:24775544-24775553 chr6:24775361-24775370 chr6:24775104-24775118 chr6:24775588-24775597
18	SP1	chr6:24774461-24775876	K562	blood:	n/a	chr6:24775105-24775114 chr6:24775104-24775116 chr6:24775659-24775668 chr6:24775106-24775115 chr6:24775147-24775156 chr6:24775509-24775518 chr6:24775148-24775157 chr6:24775147-24775156 chr6:24775508-24775520 chr6:24775105-24775115 chr6:24775508-24775520 chr6:24775510-24775519 chr6:24775105-24775115 chr6:24775149-24775162 chr6:24775147-24775157 chr6:24775101-24775115 chr6:24775146-24775158 chr6:24775509-24775519 chr6:24775106-24775115 chr6:24775577-24775598 chr6:24775510-24775519 chr6:24775147-24775157 chr6:24775146-24775158 chr6:24775104-24775116 chr6:24775147-24775161
19	ZMIZ1	chr6:24774512-24775864	K562	blood:	n/a	n/a
20	MYBL2	chr6:24774478-24776246	HepG2	liver:	n/a	n/a
21	POLR2A	chr6:24774527-24776148	K562	blood:	n/a	n/a
22	POLR2A	chr6:24774495-24775933	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:24706431..24709046-chr6:24773872..24777096,3	K562	blood:
2	chr6:24718549..24722818-chr6:24771512..24777723,8	MCF-7	breast:
3	chr6:24666490..24670247-chr6:24774150..24780460,9	K562	blood:
4	chr6:24711892..24724164-chr6:24769415..24786834,81	K562	blood:
5	chr6:24493803..24496211-chr6:24773975..24776646,3	K562	blood:
6	chr6:24715365..24725462-chr6:24770390..24783002,86	K562	blood:
7	chr6:24717870..24723661-chr6:24773711..24778808,16	MCF-7	breast:
8	chr6:24665480..24670247-chr6:24773496..24779775,9	K562	blood:
9	chr6:24705180..24707870-chr6:24773614..24775393,3	K562	blood:

Variant related genes	Relation type
GMNN	TF binding region
ENSG00000112294	Chromatin interaction
ENSG00000111802	Chromatin interaction
ENSG00000272402	Chromatin interaction
ENSG00000112293	Chromatin interaction
ENSG00000112308	Chromatin interaction
ENSG00000112304	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv5227	chr6:24774149-24824012	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24760400-24775000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:24767000-24774600	Weak transcription	Stomach Mucosa	stomach
3	chr6:24771800-24774600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:24772200-24774600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:24773000-24774600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:24773400-24774600	Weak transcription	Fetal Heart	heart
7	chr6:24774000-24774600	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:24774000-24774600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:24774000-24775000	Flanking Active TSS	Dnd41	blood
10	chr6:24774200-24774600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:24774200-24774600	Enhancers	Primary B cells from cord blood	blood
12	chr6:24774200-24774600	Active TSS	Primary T cells from cord blood	blood
13	chr6:24774200-24774600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:24774200-24774600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:24774200-24774600	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr6:24774200-24774600	Active TSS	Monocytes-CD14+_RO01746	blood
17	chr6:24774200-24776000	Active TSS	Duodenum Mucosa	Duodenum
18	chr6:24774200-24776600	Active TSS	Fetal Brain Female	brain
19	chr6:24774200-24777000	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr6:24774200-24778200	Active TSS	K562	blood
21	chr6:24774400-24774600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:24774400-24774600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr6:24774400-24774600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr6:24774400-24774600	Enhancers	Primary B cells from peripheral blood	blood
25	chr6:24774400-24774600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr6:24774400-24774600	Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr6:24774400-24774600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:24774400-24774600	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr6:24774400-24774600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr6:24774400-24774600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:24774400-24774600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr6:24774400-24774600	Active TSS	Fetal Thymus	thymus
33	chr6:24774400-24774600	Enhancers	GM12878-XiMat	blood
34	chr6:24774400-24774600	Enhancers	Hela-S3	cervix
35	chr6:24774400-24774600	Active TSS	HepG2	liver
36	chr6:24774400-24774600	Enhancers	HUVEC	blood vessel
37	chr6:24774400-24775000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
38	chr6:24774400-24775000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr6:24774400-24775000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:24774400-24775600	Active TSS	Primary T cells fromperipheralblood	blood
41	chr6:24774400-24776000	Active TSS	Fetal Muscle Trunk	muscle
42	chr6:24774400-24776000	Active TSS	Placenta	Placenta
43	chr6:24774400-24776400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:24774400-24776400	Active TSS	Fetal Intestine Large	intestine
45	chr6:24774400-24776400	Active TSS	Placenta Amnion	Placenta Amnion
46	chr6:24774400-24776400	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr6:24774400-24776400	Active TSS	Stomach Smooth Muscle	stomach
48	chr6:24774400-24776600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:24774400-24776600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:24774400-24776600	Active TSS	Fetal Intestine Small	intestine

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