Variant report

Variant	rs11791494
Chromosome Location	chr9:16294576-16294577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11790836	1.00[AFR][1000 genomes]
rs1332484	0.96[EUR][1000 genomes]
rs55730256	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55850362	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56103310	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56268842	0.94[EUR][1000 genomes]
rs56411056	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62551098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62551099	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62551100	1.00[EUR][1000 genomes]
rs62551101	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62552361	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6475030	1.00[EUR][1000 genomes]
rs6475031	1.00[EUR][1000 genomes]
rs6475035	0.91[EUR][1000 genomes]
rs7024344	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7036684	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7849170	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv892643	chr9:16275107-16306523	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv892644	chr9:16275107-16389006	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv892645	chr9:16292669-16368732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16290600-16294600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:16293200-16295000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:16293400-16295000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:16293400-16295000	Enhancers	Adipose Nuclei	Adipose
5	chr9:16293400-16295200	Enhancers	Fetal Stomach	stomach
6	chr9:16293600-16294800	Enhancers	Fetal Muscle Leg	muscle
7	chr9:16293600-16295400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:16294000-16294800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr9:16294000-16295200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr9:16294200-16294600	Enhancers	Aorta	Aorta
11	chr9:16294200-16294800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:16294200-16295000	Enhancers	HSMM	muscle
13	chr9:16294200-16295000	Enhancers	HSMMtube	muscle
14	chr9:16294200-16295200	Enhancers	Stomach Smooth Muscle	stomach
15	chr9:16294400-16294600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:16294400-16294800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:16294400-16294800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:16294400-16294800	Enhancers	Brain Germinal Matrix	brain
19	chr9:16294400-16295000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:16294400-16295200	Enhancers	Osteobl	bone

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