Variant report

Variant	rs55850362
Chromosome Location	chr9:16305641-16305642
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11791494	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1332484	0.85[EUR][1000 genomes]
rs55730256	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56103310	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56268842	0.94[EUR][1000 genomes]
rs56411056	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62551098	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62551099	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62551100	0.89[EUR][1000 genomes]
rs62551101	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62552361	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6475030	0.89[EUR][1000 genomes]
rs6475031	0.89[EUR][1000 genomes]
rs6475035	0.93[EUR][1000 genomes]
rs7024344	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7036684	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7849170	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv892643	chr9:16275107-16306523	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv892644	chr9:16275107-16389006	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv892645	chr9:16292669-16368732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16303800-16309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:16304200-16306000	Weak transcription	Fetal Kidney	kidney
3	chr9:16304200-16310800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:16304400-16309000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:16304600-16309200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:16305000-16308800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:16305000-16309200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:16305200-16306600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:16305200-16306600	Weak transcription	Pancreas	Pancrea
10	chr9:16305400-16306600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:16305600-16309800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr9:16305600-16310000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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