Variant report

Variant	rs11792561
Chromosome Location	chr9:93581183-93581184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93563428..93565399-chr9:93578384..93582187,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165025	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12005463	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550873	0.81[CEU][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552742	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12682953	1.00[ASN][1000 genomes]
rs12685847	1.00[ASN][1000 genomes]
rs12686576	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1331504	1.00[ASN][1000 genomes]
rs1460836	1.00[ASN][1000 genomes]
rs17454793	1.00[ASN][1000 genomes]
rs60044325	0.84[AMR][1000 genomes]
rs61388775	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62558478	1.00[ASN][1000 genomes]
rs62558479	1.00[ASN][1000 genomes]
rs62558496	1.00[ASN][1000 genomes]
rs62558501	1.00[ASN][1000 genomes]
rs62558503	1.00[ASN][1000 genomes]
rs62558550	1.00[ASN][1000 genomes]
rs62558551	1.00[ASN][1000 genomes]
rs62558552	1.00[ASN][1000 genomes]
rs62558553	1.00[ASN][1000 genomes]
rs62558555	1.00[ASN][1000 genomes]
rs62558557	1.00[ASN][1000 genomes]
rs62559062	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62559063	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019286	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7046491	0.81[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893567	chr9:93519280-93609668	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv893569	chr9:93552550-93587089	Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93565000-93609000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:93567800-93584800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:93567800-93584800	Weak transcription	Fetal Intestine Large	intestine
4	chr9:93567800-93597400	Weak transcription	Gastric	stomach
5	chr9:93572600-93591000	Weak transcription	Lung	lung
6	chr9:93572800-93584800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr9:93573200-93589600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:93576800-93582400	Weak transcription	Small Intestine	intestine
9	chr9:93577000-93585800	Genic enhancers	Primary B cells from peripheral blood	blood
10	chr9:93577000-93598800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:93577200-93589000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:93577800-93582200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr9:93577800-93584000	Weak transcription	HMEC	breast
14	chr9:93577800-93584800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:93577800-93585000	Weak transcription	Spleen	Spleen
16	chr9:93577800-93606200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:93578000-93585000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:93578200-93582400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:93578200-93585000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr9:93578600-93584800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:93578600-93592400	Weak transcription	Esophagus	oesophagus
22	chr9:93579000-93582800	Genic enhancers	Primary monocytes fromperipheralblood	blood
23	chr9:93579800-93581400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:93580200-93581200	Genic enhancers	Primary hematopoietic stem cells	blood
25	chr9:93580200-93581200	Enhancers	Pancreas	Pancrea
26	chr9:93580200-93581600	ZNF genes & repeats	GM12878-XiMat	blood
27	chr9:93580400-93581200	Genic enhancers	Primary B cells from cord blood	blood
28	chr9:93580400-93582200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr9:93580400-93583000	Strong transcription	Fetal Thymus	thymus
30	chr9:93580400-93586600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
31	chr9:93580600-93581200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:93580600-93581200	Enhancers	Stomach Mucosa	stomach
33	chr9:93580600-93581200	Strong transcription	Thymus	Thymus
34	chr9:93580600-93581600	Genic enhancers	Monocytes-CD14+_RO01746	blood
35	chr9:93580800-93582600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:93580800-93588800	Weak transcription	Fetal Stomach	stomach
37	chr9:93580800-93603400	Weak transcription	K562	blood
38	chr9:93581000-93581200	Genic enhancers	Fetal Intestine Small	intestine
39	chr9:93581000-93581400	Weak transcription	Fetal Kidney	kidney
40	chr9:93581000-93581600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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