Variant report

Variant	rs11792798
Chromosome Location	chr9:22209120-22209121
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:22156472..22158665-chr9:22208832..22210548,2	MCF-7	breast:
2	chr9:22118416..22121118-chr9:22207719..22210704,4	MCF-7	breast:
3	chr9:22202618..22206496-chr9:22207290..22210122,4	MCF-7	breast:
4	chr9:21836786..21838286-chr9:22208693..22210311,2	MCF-7	breast:
5	chr9:22139653..22143239-chr9:22209012..22211720,3	MCF-7	breast:
6	chr9:22105824..22107359-chr9:22208514..22210468,2	MCF-7	breast:
7	chr9:22201250..22204236-chr9:22206812..22210555,3	MCF-7	breast:
8	chr9:22134989..22139400-chr9:22207897..22213962,14	MCF-7	breast:
9	chr9:22155649..22159842-chr9:22208995..22214201,6	MCF-7	breast:

No data

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11788928	0.95[EUR][1000 genomes]
rs11790978	1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11792897	1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs11792932	0.85[EUR][1000 genomes]
rs12003808	0.90[EUR][1000 genomes]
rs16905769	1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2025797	0.90[EUR][1000 genomes]
rs2383209	1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2383212	0.86[EUR][1000 genomes]
rs4461984	0.90[EUR][1000 genomes]
rs4540492	0.85[EUR][1000 genomes]
rs4621906	0.85[EUR][1000 genomes]
rs4644346	0.85[EUR][1000 genomes]
rs62555449	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62555450	0.90[EUR][1000 genomes]
rs62555451	0.90[EUR][1000 genomes]
rs62555452	0.85[EUR][1000 genomes]
rs62555453	0.84[ASN][1000 genomes]
rs62555455	0.81[EUR][1000 genomes]
rs62559460	0.85[EUR][1000 genomes]
rs62559467	0.85[EUR][1000 genomes]
rs62559468	0.90[EUR][1000 genomes]
rs62559469	0.85[EUR][1000 genomes]
rs62559470	0.85[EUR][1000 genomes]
rs62559471	0.85[EUR][1000 genomes]
rs62559472	0.86[EUR][1000 genomes]
rs62559473	0.86[EUR][1000 genomes]
rs62559474	0.86[EUR][1000 genomes]
rs62559475	0.86[EUR][1000 genomes]
rs6475620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7035115	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73442947	1.00[EUR][1000 genomes]
rs73444955	0.85[EUR][1000 genomes]
rs736723	1.00[EUR][1000 genomes]
rs7848967	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7853566	0.90[EUR][1000 genomes]
rs7859353	1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs7859407	0.86[EUR][1000 genomes]
rs7872728	0.85[EUR][1000 genomes]
rs943399	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv892749	chr9:22125913-22244280	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1021264	chr9:22159622-22293804	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1033789	chr9:22183150-22266091	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1029289	chr9:22193167-23023688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22200800-22216600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:22202400-22209400	Enhancers	Primary B cells from cord blood	blood
3	chr9:22204000-22210400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:22204600-22210400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:22208400-22212800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:22208400-22212800	Enhancers	HMEC	breast
7	chr9:22208600-22209200	Enhancers	Osteobl	bone
8	chr9:22208600-22209400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:22208600-22209400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr9:22208600-22209400	Enhancers	Stomach Mucosa	stomach
11	chr9:22208600-22209400	Flanking Active TSS	A549	lung
12	chr9:22208600-22209600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr9:22208600-22209800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:22208600-22209800	Enhancers	NH-A	brain
15	chr9:22208600-22213600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:22208600-22214600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:22208600-22217200	Enhancers	HSMMtube	muscle
18	chr9:22208800-22209200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr9:22208800-22209200	Enhancers	Adipose Nuclei	Adipose
20	chr9:22208800-22209200	Enhancers	Colon Smooth Muscle	Colon
21	chr9:22208800-22209200	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr9:22208800-22209200	Enhancers	Small Intestine	intestine
23	chr9:22208800-22209400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:22208800-22209400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:22208800-22209400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:22208800-22209400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:22208800-22209400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chr9:22208800-22209400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr9:22208800-22209400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr9:22208800-22209400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr9:22208800-22209400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr9:22208800-22209400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:22208800-22209400	Enhancers	Liver	Liver
34	chr9:22208800-22209400	Enhancers	Fetal Intestine Small	intestine
35	chr9:22208800-22209400	Enhancers	Ovary	ovary
36	chr9:22208800-22209400	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr9:22208800-22209600	Enhancers	Primary B cells from peripheral blood	blood
38	chr9:22208800-22209600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr9:22208800-22209600	Flanking Active TSS	Hela-S3	cervix
40	chr9:22208800-22209600	Flanking Active TSS	NHEK	skin
41	chr9:22208800-22209800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr9:22208800-22218000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:22209000-22209200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr9:22209000-22209200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr9:22209000-22209200	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr9:22209000-22209400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr9:22209000-22209400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
48	chr9:22209000-22209400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr9:22209000-22209400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr9:22209000-22209400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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