Variant report

Variant	rs62559475
Chromosome Location	chr9:22236473-22236474
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:22082310..22089949-chr9:22236353..22239754,11	MCF-7	breast:
2	chr9:21802593..21806995-chr9:22235653..22238440,4	MCF-7	breast:
3	chr9:21989791..21997438-chr9:22235038..22242897,11	MCF-7	breast:
4	chr9:22208635..22217579-chr9:22235952..22243529,17	MCF-7	breast:
5	chr9:21811209..21815369-chr9:22236301..22242853,10	MCF-7	breast:
6	chr9:22134724..22142146-chr9:22236106..22241744,12	MCF-7	breast:
7	chr9:22133587..22139389-chr9:22236165..22240719,9	MCF-7	breast:
8	chr9:22218358..22220898-chr9:22236152..22238994,2	MCF-7	breast:
9	chr9:22208810..22215725-chr9:22233777..22241391,18	MCF-7	breast:
10	chr9:22236421..22237944-chr9:22446072..22447963,2	MCF-7	breast:
11	chr9:22117727..22120443-chr9:22236352..22239028,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000236921	Chromatin interaction
ENSG00000099810	Chromatin interaction
ENSG00000229298	Chromatin interaction
ENSG00000147889	Chromatin interaction
ENSG00000176399	Chromatin interaction
ENSG00000264545	Chromatin interaction
ENSG00000240498	Chromatin interaction
ENSG00000266446	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11788928	0.90[EUR][1000 genomes]
rs11790978	0.86[EUR][1000 genomes]
rs11792798	0.86[EUR][1000 genomes]
rs11792897	0.90[EUR][1000 genomes]
rs11792932	0.90[EUR][1000 genomes]
rs12003808	0.95[EUR][1000 genomes]
rs16905769	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2025797	0.95[EUR][1000 genomes]
rs2383209	0.95[EUR][1000 genomes]
rs2383212	1.00[EUR][1000 genomes]
rs4461984	0.95[EUR][1000 genomes]
rs4540492	0.81[EUR][1000 genomes]
rs4621906	0.81[EUR][1000 genomes]
rs4644346	0.90[EUR][1000 genomes]
rs62555449	0.81[EUR][1000 genomes]
rs62555450	0.95[EUR][1000 genomes]
rs62555451	0.95[EUR][1000 genomes]
rs62555452	0.90[EUR][1000 genomes]
rs62555453	0.85[EUR][1000 genomes]
rs62555455	0.95[EUR][1000 genomes]
rs62559460	0.90[EUR][1000 genomes]
rs62559467	0.90[EUR][1000 genomes]
rs62559468	0.95[EUR][1000 genomes]
rs62559469	0.90[EUR][1000 genomes]
rs62559470	0.90[EUR][1000 genomes]
rs62559471	0.90[EUR][1000 genomes]
rs62559472	1.00[EUR][1000 genomes]
rs62559473	1.00[EUR][1000 genomes]
rs62559474	1.00[EUR][1000 genomes]
rs62559493	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6475620	0.86[EUR][1000 genomes]
rs7035115	0.86[EUR][1000 genomes]
rs73442947	0.86[EUR][1000 genomes]
rs73444955	0.90[EUR][1000 genomes]
rs736723	0.86[EUR][1000 genomes]
rs7848967	0.86[EUR][1000 genomes]
rs7853566	0.95[EUR][1000 genomes]
rs7859353	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7859407	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7872728	0.90[EUR][1000 genomes]
rs943399	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv892749	chr9:22125913-22244280	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1021264	chr9:22159622-22293804	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1033789	chr9:22183150-22266091	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1029289	chr9:22193167-23023688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1016067	chr9:22210874-22432654	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1015364	chr9:22211364-22416886	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv540086	chr9:22211364-22416886	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22231200-22237400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:22231600-22237600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:22236200-22237600	Enhancers	A549	lung
4	chr9:22236400-22236600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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