Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:61734623..61736953-chr9:110522196..110523981,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12684481	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs12685872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55664534	1.00[ASN][1000 genomes]
rs72746134	0.87[ASN][1000 genomes]
rs72746145	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72746163	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110518200-110544600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:110521200-110524000	Enhancers	Placenta	Placenta
3	chr9:110521200-110524400	Enhancers	Spleen	Spleen
4	chr9:110521600-110530400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:110521800-110524000	Enhancers	Duodenum Mucosa	Duodenum
6	chr9:110522200-110524000	Enhancers	Right Atrium	heart
7	chr9:110522200-110524000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr9:110523000-110524000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:110523000-110524000	Enhancers	Small Intestine	intestine
10	chr9:110523200-110523800	Weak transcription	Stomach Mucosa	stomach
11	chr9:110523200-110524000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr9:110523200-110525400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr9:110523200-110535200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:110523400-110523800	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr9:110523400-110524600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr9:110523600-110524000	Enhancers	Liver	Liver
17	chr9:110523600-110524200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:110523600-110524400	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr9:110523600-110524600	Enhancers	Adipose Nuclei	Adipose
20	chr9:110523600-110528000	Weak transcription	Left Ventricle	heart

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