Variant report

Variant	rs11793356
Chromosome Location	chr9:104117059-104117060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:80)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:80 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr9:104116728-104117259	A549	lung:	n/a	n/a
2	POLR2A	chr9:104116105-104117150	HepG2	liver:	n/a	n/a
3	EP300	chr9:104116444-104117639	HepG2	liver:	n/a	n/a
4	NFIC	chr9:104115878-104117587	HepG2	liver:	n/a	n/a
5	MBD4	chr9:104116123-104117293	HepG2	liver:	n/a	n/a
6	HNF4A	chr9:104116600-104117549	HepG2	liver:	n/a	chr9:104117446-104117461
7	FOS	chr9:104116784-104117101	MCF10A-Er-Src	breast:	n/a	n/a
8	FOXA1	chr9:104116618-104117186	HepG2	liver:	n/a	n/a
9	JUND	chr9:104116685-104117125	A549	lung:	n/a	chr9:104116918-104116929
10	JUN	chr9:104116622-104117231	HepG2	liver:	n/a	n/a
11	MAX	chr9:104115888-104117882	HepG2	liver:	n/a	n/a
12	TEAD4	chr9:104115896-104117654	HepG2	liver:	n/a	n/a
13	EP300	chr9:104116600-104117364	A549	lung:	n/a	n/a
14	SMC3	chr9:104116650-104117403	HepG2	liver:	n/a	n/a
15	YY1	chr9:104116782-104117319	A549	lung:	n/a	n/a
16	FOXA1	chr9:104116617-104117270	HepG2	liver:	n/a	n/a
17	SP1	chr9:104116478-104117318	A549	lung:	n/a	n/a
18	EP300	chr9:104116601-104117202	HepG2	liver:	n/a	n/a
19	MAFF	chr9:104116610-104117618	HepG2	liver:	n/a	n/a
20	SP1	chr9:104116565-104117355	A549	lung:	n/a	n/a
21	FOXA1	chr9:104116610-104117375	HepG2	liver:	n/a	n/a
22	FOXA2	chr9:104116523-104117177	HepG2	liver:	n/a	n/a
23	FOSL2	chr9:104116462-104117268	HepG2	liver:	n/a	chr9:104116919-104116930
24	HDAC2	chr9:104116615-104117245	HepG2	liver:	n/a	n/a
25	MAX	chr9:104116468-104117777	HepG2	liver:	n/a	n/a
26	NFIC	chr9:104116429-104117646	HepG2	liver:	n/a	n/a
27	FOXA2	chr9:104116735-104117224	A549	lung:	n/a	n/a
28	USF1	chr9:104117048-104117319	A549	lung:	n/a	chr9:104117221-104117232
29	CEBPB	chr9:104116653-104117114	A549	lung:	n/a	n/a
30	FOXA2	chr9:104116663-104117196	HepG2	liver:	n/a	n/a
31	FOS	chr9:104116788-104117100	MCF10A-Er-Src	breast:	n/a	n/a
32	USF1	chr9:104116644-104117457	A549	lung:	n/a	chr9:104117221-104117232
33	HEY1	chr9:104116507-104117440	HepG2	liver:	n/a	n/a
34	TBP	chr9:104116657-104117306	HepG2	liver:	n/a	n/a
35	TCF12	chr9:104116673-104117144	A549	lung:	n/a	n/a
36	TCF12	chr9:104116065-104117598	A549	lung:	n/a	n/a
37	MAX	chr9:104116335-104117499	A549	lung:	n/a	n/a
38	RAD21	chr9:104116602-104117168	HepG2	liver:	n/a	n/a
39	JUND	chr9:104116674-104117343	HepG2	liver:	n/a	chr9:104116918-104116929
40	FOSL2	chr9:104116587-104117236	HepG2	liver:	n/a	chr9:104116919-104116930
41	BHLHE40	chr9:104116122-104117622	HepG2	liver:	n/a	n/a
42	EP300	chr9:104116615-104117359	A549	lung:	n/a	n/a
43	REST	chr9:104116565-104117243	A549	lung:	n/a	n/a
44	EP300	chr9:104116707-104117502	HepG2	liver:	n/a	n/a
45	JUND	chr9:104116770-104117082	A549	lung:	n/a	chr9:104116918-104116929
46	MBD4	chr9:104115931-104117779	HepG2	liver:	n/a	n/a
47	YY1	chr9:104116805-104117212	HepG2	liver:	n/a	n/a
48	POLR2A	chr9:104116481-104117094	HepG2	liver:	n/a	n/a
49	TCF7L2	chr9:104116689-104117087	HepG2	liver:	n/a	n/a
50	RXRA	chr9:104116692-104117100	HepG2	liver:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:104114762..104117661-chr9:104119094..104121364,2	K562	blood:
2	chr9:104103557..104105942-chr9:104115837..104118700,2	K562	blood:
3	chr9:104115563..104118166-chr9:104124476..104126827,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000230328	TF binding region
ENSG00000236763	Chromatin interaction
ENSG00000230328	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10114241	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120345	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788495	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792588	0.92[EUR][1000 genomes]
rs11793528	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11795175	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338315	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350797	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12351725	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341761	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1341762	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920215	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920222	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935236	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935237	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2417252	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34914973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274981	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274983	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41281027	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55666756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55899105	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55995111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56013964	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56218359	0.96[ASN][1000 genomes]
rs56218982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56251240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56389202	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57082508	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57802761	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57833016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58497759	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59059615	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59311341	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61040758	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7019447	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023266	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7023837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023948	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024225	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7026000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7034047	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039422	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048634	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656609	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656612	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656616	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656622	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656626	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656631	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656633	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656638	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73656639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656640	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656644	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656646	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656648	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73657933	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848855	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7849953	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104115000-104118400	Enhancers	Fetal Intestine Small	intestine
2	chr9:104115000-104119000	Enhancers	Stomach Mucosa	stomach
3	chr9:104115000-104119200	Enhancers	Fetal Intestine Large	intestine
4	chr9:104115200-104117400	Enhancers	Duodenum Mucosa	Duodenum
5	chr9:104115400-104119200	Enhancers	Liver	Liver
6	chr9:104115600-104118200	Enhancers	Small Intestine	intestine
7	chr9:104116000-104117200	Weak transcription	K562	blood
8	chr9:104116400-104117400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:104116400-104118200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr9:104116600-104117200	Enhancers	NHEK	skin
11	chr9:104116600-104117400	Flanking Active TSS	HepG2	liver
12	chr9:104116600-104117600	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr9:104116600-104117800	Enhancers	Pancreas	Pancrea
14	chr9:104116800-104117200	Active TSS	A549	lung

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