Variant report

Variant	rs56218359
Chromosome Location	chr9:104102383-104102384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10114241	0.96[ASN][1000 genomes]
rs10120345	0.96[ASN][1000 genomes]
rs11788457	0.96[ASN][1000 genomes]
rs11788495	0.96[ASN][1000 genomes]
rs11790458	0.96[ASN][1000 genomes]
rs11793356	0.96[ASN][1000 genomes]
rs11793528	0.96[ASN][1000 genomes]
rs11793745	0.96[ASN][1000 genomes]
rs11793951	0.88[ASN][1000 genomes]
rs11795175	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12338315	0.96[ASN][1000 genomes]
rs12350797	0.96[ASN][1000 genomes]
rs12351725	0.96[ASN][1000 genomes]
rs1341761	0.92[ASN][1000 genomes]
rs1341762	0.96[ASN][1000 genomes]
rs1361610	0.80[AFR][1000 genomes]
rs16920215	0.96[ASN][1000 genomes]
rs16920222	0.96[ASN][1000 genomes]
rs1935236	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1935237	0.96[ASN][1000 genomes]
rs2226101	0.86[AFR][1000 genomes]
rs2417252	0.96[ASN][1000 genomes]
rs34914973	0.96[ASN][1000 genomes]
rs41274981	0.96[ASN][1000 genomes]
rs41274983	0.80[ASN][1000 genomes]
rs41281027	0.96[ASN][1000 genomes]
rs55666756	0.96[ASN][1000 genomes]
rs55899105	0.96[ASN][1000 genomes]
rs55995111	0.96[ASN][1000 genomes]
rs56013964	0.96[ASN][1000 genomes]
rs56135593	0.82[EUR][1000 genomes]
rs56218982	0.96[ASN][1000 genomes]
rs56251240	0.96[ASN][1000 genomes]
rs56389202	0.96[ASN][1000 genomes]
rs57082508	0.88[ASN][1000 genomes]
rs57802761	0.96[ASN][1000 genomes]
rs57833016	0.96[ASN][1000 genomes]
rs58497759	0.96[ASN][1000 genomes]
rs59059615	0.84[ASN][1000 genomes]
rs59311341	0.96[ASN][1000 genomes]
rs61040758	0.84[ASN][1000 genomes]
rs7019447	0.96[ASN][1000 genomes]
rs7023266	0.88[ASN][1000 genomes]
rs7023837	0.96[ASN][1000 genomes]
rs7023948	0.96[ASN][1000 genomes]
rs7023972	0.96[ASN][1000 genomes]
rs7024225	0.88[ASN][1000 genomes]
rs7026000	0.96[ASN][1000 genomes]
rs7034047	0.96[ASN][1000 genomes]
rs7039422	0.96[ASN][1000 genomes]
rs7048634	0.96[ASN][1000 genomes]
rs73656609	0.96[ASN][1000 genomes]
rs73656612	0.96[ASN][1000 genomes]
rs73656616	0.96[ASN][1000 genomes]
rs73656617	0.96[ASN][1000 genomes]
rs73656618	0.96[ASN][1000 genomes]
rs73656619	0.96[ASN][1000 genomes]
rs73656620	0.96[ASN][1000 genomes]
rs73656621	0.96[ASN][1000 genomes]
rs73656622	0.96[ASN][1000 genomes]
rs73656623	0.96[ASN][1000 genomes]
rs73656624	0.96[ASN][1000 genomes]
rs73656625	0.96[ASN][1000 genomes]
rs73656626	0.96[ASN][1000 genomes]
rs73656627	0.96[ASN][1000 genomes]
rs73656628	0.96[ASN][1000 genomes]
rs73656629	0.96[ASN][1000 genomes]
rs73656630	0.96[ASN][1000 genomes]
rs73656631	0.96[ASN][1000 genomes]
rs73656632	0.96[ASN][1000 genomes]
rs73656633	0.96[ASN][1000 genomes]
rs73656635	0.96[ASN][1000 genomes]
rs73656636	0.96[ASN][1000 genomes]
rs73656637	0.96[ASN][1000 genomes]
rs73656638	0.88[ASN][1000 genomes]
rs73656639	0.96[ASN][1000 genomes]
rs73656640	0.96[ASN][1000 genomes]
rs73656642	0.96[ASN][1000 genomes]
rs73656643	0.96[ASN][1000 genomes]
rs73656644	0.96[ASN][1000 genomes]
rs73656645	0.96[ASN][1000 genomes]
rs73656646	0.96[ASN][1000 genomes]
rs73656647	0.96[ASN][1000 genomes]
rs73656648	0.96[ASN][1000 genomes]
rs73656649	0.96[ASN][1000 genomes]
rs73656650	0.96[ASN][1000 genomes]
rs73657933	0.96[ASN][1000 genomes]
rs7848855	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104098600-104104200	Weak transcription	HepG2	liver

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