Variant report

Variant	rs11794139
Chromosome Location	chr9:16223113-16223114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11793155	1.00[ASN][1000 genomes]
rs16934271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17787306	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv892640	chr9:16206695-16260837	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv892641	chr9:16218659-16242088	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16215000-16223400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16218600-16223400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:16218600-16233600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:16219000-16223600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:16221200-16223200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr9:16221200-16223400	Enhancers	Hela-S3	cervix
7	chr9:16221200-16224000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:16221200-16224000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:16221200-16224200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr9:16221400-16223200	Enhancers	A549	lung
11	chr9:16221400-16223800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr9:16221400-16223800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr9:16221600-16224200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr9:16221600-16226800	Weak transcription	Right Atrium	heart
15	chr9:16221800-16223600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:16221800-16223600	Weak transcription	Fetal Stomach	stomach
17	chr9:16221800-16224400	Enhancers	Fetal Intestine Small	intestine
18	chr9:16221800-16224400	Enhancers	Stomach Mucosa	stomach
19	chr9:16222000-16223400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:16222200-16223400	Enhancers	Duodenum Mucosa	Duodenum
21	chr9:16222200-16224800	Enhancers	Fetal Intestine Large	intestine
22	chr9:16222400-16223400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:16222400-16223400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:16222400-16223600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:16222400-16224200	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr9:16222600-16223600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:16222600-16223600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:16223000-16223800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr9:16223000-16223800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:16223000-16224000	Enhancers	Muscle Satellite Cultured Cells	--

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