Variant report

Variant	rs17787306
Chromosome Location	chr9:16217593-16217594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf93-8	chr9:16216806-16219226	NONHSAT130285

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11794139	0.87[AFR][1000 genomes]
rs16934271	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17725257	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs56248103	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv892640	chr9:16206695-16260837	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16214600-16218200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:16214800-16217800	Weak transcription	Osteobl	bone
3	chr9:16215000-16223400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:16215200-16217800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:16215200-16217800	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:16215200-16218000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:16215400-16217800	Weak transcription	HSMM	muscle
8	chr9:16215400-16218400	Weak transcription	HSMMtube	muscle
9	chr9:16215400-16218400	Weak transcription	NHLF	lung
10	chr9:16215400-16220800	Weak transcription	Adipose Nuclei	Adipose
11	chr9:16215400-16222000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:16215600-16218400	Weak transcription	Aorta	Aorta
13	chr9:16215600-16221200	Weak transcription	Fetal Kidney	kidney
14	chr9:16215800-16218000	Weak transcription	Lung	lung
15	chr9:16215800-16221400	Weak transcription	Right Atrium	heart
16	chr9:16216000-16218000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:16216000-16218200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:16216000-16218200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:16216200-16218200	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:16216600-16218200	Weak transcription	Fetal Stomach	stomach
21	chr9:16216800-16218000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:16217000-16221200	Weak transcription	Fetal Lung	lung
23	chr9:16217000-16221200	Weak transcription	Ovary	ovary
24	chr9:16217200-16221400	Weak transcription	A549	lung
25	chr9:16217400-16218200	Enhancers	Stomach Smooth Muscle	stomach

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