Variant report

Variant	rs11794757
Chromosome Location	chr9:99979317-99979318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10817175	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10817176	0.85[AMR][1000 genomes]
rs10817178	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10817179	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10817180	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10817181	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10817183	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10817192	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10817211	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10817263	0.81[EUR][1000 genomes]
rs10817266	0.80[EUR][1000 genomes]
rs10980873	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10980889	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10980894	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10980896	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10980912	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10980939	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10981026	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981130	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10981301	0.81[EUR][1000 genomes]
rs11789331	0.85[AMR][1000 genomes]
rs11792076	0.88[EUR][1000 genomes]
rs11792723	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11792736	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11795173	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12235225	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12235677	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12237438	0.81[EUR][1000 genomes]
rs12237510	0.81[EUR][1000 genomes]
rs12237712	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12237849	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12238318	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12238745	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12686392	0.81[EUR][1000 genomes]
rs1986463	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35085150	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3953684	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41281914	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4263876	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57176573	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57936136	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58723976	0.85[AMR][1000 genomes]
rs61050463	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7032137	0.87[AMR][1000 genomes]
rs73654680	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73654686	0.81[EUR][1000 genomes]
rs73654687	0.80[EUR][1000 genomes]
rs7849583	0.94[AMR][1000 genomes]
rs7859766	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931946	chr9:99895658-100005099	Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893607	chr9:99906545-99996548	Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893608	chr9:99906545-100005128	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv972433	chr9:99962059-99983443	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99976200-99981400	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr9:99976200-99983000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr9:99976600-99985000	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr9:99976600-99985000	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr9:99976800-99979600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:99976800-99980000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:99976800-99985200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr9:99976800-99985400	Active TSS	H1 Cell Line	embryonic stem cell
9	chr9:99977000-99979600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:99977200-99981400	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr9:99977800-99980600	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr9:99978000-99979600	Active TSS	iPS-18 Cell Line	embryonic stem cell

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