Variant report

Variant	rs11799370
Chromosome Location	chr1:72013640-72013641
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10218740	0.82[YRI][hapmap]
rs10889919	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10889920	0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11209789	0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11209790	0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11209791	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11800427	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11801002	1.00[YRI][hapmap]
rs11802260	0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11805833	1.00[YRI][hapmap]
rs11807398	1.00[YRI][hapmap]
rs11807423	0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11808329	1.00[YRI][hapmap]
rs11811674	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12240058	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs13375931	1.00[YRI][hapmap]
rs13375945	1.00[YRI][hapmap]
rs28370477	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28524640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61350755	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72936140	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72936152	0.85[AFR][1000 genomes]
rs72936156	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72936157	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72936165	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72936169	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72936171	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72936176	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72936177	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72938046	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72938066	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72938067	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72938068	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72938069	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72938087	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72938088	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72938089	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72938091	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7354941	0.82[YRI][hapmap]
rs7518830	1.00[YRI][hapmap]
rs7556206	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv916508	chr1:71777392-72046388	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv546474	chr1:71793221-72040354	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1003527	chr1:71989558-72025236	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1001099	chr1:71998264-72022230	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1007250	chr1:71998391-72350683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv534992	chr1:71998391-72350683	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1014047	chr1:72003562-72022230	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72013200-72013800	Enhancers	Fetal Brain Male	brain

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