Variant report

Variant	rs72936177
Chromosome Location	chr1:71976925-71976926
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10889919	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10889920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11209789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11209790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11209791	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11799370	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11800427	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11802260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11807423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11811674	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12240058	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370477	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28524640	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs61350755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936140	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936152	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72936156	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72936157	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936165	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936169	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936171	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936176	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938067	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938088	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72938089	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938091	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv916508	chr1:71777392-72046388	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv546474	chr1:71793221-72040354	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830170	chr1:71856447-72008758	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71976400-71977000	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links