Variant report

Variant	rs11799711
Chromosome Location	chr1:10171144-10171145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11800072	1.00[AMR][1000 genomes]
rs11801417	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11803976	1.00[AMR][1000 genomes]
rs11804081	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11806062	1.00[AMR][1000 genomes]
rs11806801	1.00[AMR][1000 genomes]
rs11808892	1.00[AMR][1000 genomes]
rs11810806	1.00[AMR][1000 genomes]
rs12034805	1.00[CHD][hapmap]
rs12088302	1.00[CHD][hapmap]
rs12131785	1.00[CHD][hapmap]
rs34219152	1.00[CHD][hapmap]
rs35632014	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv527217	chr1:10093457-10257167	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv522629	chr1:10125765-10239197	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10145400-10189600	Weak transcription	Psoas Muscle	Psoas
2	chr1:10145800-10197000	Weak transcription	Stomach Mucosa	stomach
3	chr1:10153800-10172200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:10154800-10172000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:10154800-10183000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:10155000-10171400	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr1:10158400-10178000	Strong transcription	Primary T cells from cord blood	blood
8	chr1:10158600-10174000	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:10160200-10175800	Strong transcription	Fetal Stomach	stomach
10	chr1:10160400-10171400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr1:10160600-10171800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:10161200-10171800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:10161200-10172000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr1:10162400-10171800	Strong transcription	Liver	Liver
15	chr1:10162800-10171600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:10162800-10171600	Strong transcription	Primary B cells from cord blood	blood
17	chr1:10162800-10171800	Strong transcription	Placenta	Placenta
18	chr1:10163400-10219000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:10163800-10171600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr1:10164000-10227400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr1:10166200-10179200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr1:10166600-10171600	Strong transcription	Fetal Thymus	thymus
23	chr1:10166600-10181200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr1:10167000-10171600	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr1:10167000-10181800	Weak transcription	A549	lung
26	chr1:10167200-10179200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr1:10167400-10173000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr1:10167400-10174200	Weak transcription	HepG2	liver
29	chr1:10167400-10181600	Weak transcription	Fetal Brain Male	brain
30	chr1:10167400-10188400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr1:10167400-10192600	Weak transcription	Small Intestine	intestine
32	chr1:10167600-10179400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:10167600-10181600	Weak transcription	Right Ventricle	heart
34	chr1:10167600-10190400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr1:10167600-10207400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr1:10167800-10184000	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr1:10168200-10173000	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr1:10168600-10171800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr1:10168600-10171800	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr1:10169000-10178000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr1:10169000-10179200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr1:10169000-10179200	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr1:10169000-10182400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr1:10169200-10172000	Strong transcription	Lung	lung
45	chr1:10169200-10173000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr1:10169200-10175600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr1:10169200-10175600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr1:10169200-10175600	Weak transcription	K562	blood
49	chr1:10169200-10175800	Weak transcription	NHDF-Ad	bronchial
50	chr1:10169200-10177000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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