Variant report
| Variant | rs11800634 |
|---|---|
| Chromosome Location | chr1:73188723-73188724 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:73181346..73184286-chr1:73186090..73189025,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000212366 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10465865 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10465866 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11210022 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11210028 | 1.00[EUR][1000 genomes] |
| rs11210036 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11807168 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12062883 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12066284 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12073769 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12082218 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12086840 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12087633 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12092131 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12092187 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17093299 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34236777 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56690886 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61224710 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6690920 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72946915 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72948923 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9326103 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9326104 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428101 | chr1:73017520-73211351 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv871636 | chr1:73048685-73274919 | ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv871181 | chr1:73084221-73305593 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv2757735 | chr1:73181612-73307170 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | esv2758941 | chr1:73181612-73307170 | Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | esv3331895 | chr1:73183764-73189062 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
