Variant report

Variant	rs11807168
Chromosome Location	chr1:73144511-73144512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10465865	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10465866	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889969	1.00[ASN][1000 genomes]
rs10889976	1.00[ASN][1000 genomes]
rs10889981	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11209987	1.00[ASN][1000 genomes]
rs11209989	1.00[ASN][1000 genomes]
rs11209993	1.00[ASN][1000 genomes]
rs11209997	1.00[ASN][1000 genomes]
rs11209998	1.00[ASN][1000 genomes]
rs11210000	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11210001	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11210002	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11210015	1.00[ASN][1000 genomes]
rs11210016	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11210018	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11210019	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11210021	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11210022	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210036	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210042	1.00[ASN][1000 genomes]
rs11800634	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11803059	1.00[ASN][1000 genomes]
rs12062883	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12066284	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12066923	1.00[ASN][1000 genomes]
rs12070137	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12072129	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12072443	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12072444	1.00[ASN][1000 genomes]
rs12073769	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073811	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12076822	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12078724	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12082218	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12082422	1.00[ASN][1000 genomes]
rs12086840	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087633	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087817	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12088885	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12092131	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12092187	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13352999	1.00[ASN][1000 genomes]
rs1373915	1.00[ASN][1000 genomes]
rs17093152	1.00[ASN][1000 genomes]
rs17093160	1.00[ASN][1000 genomes]
rs17093164	1.00[ASN][1000 genomes]
rs17093275	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17093297	1.00[ASN][1000 genomes]
rs17093299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17093396	1.00[ASN][1000 genomes]
rs2017920	1.00[ASN][1000 genomes]
rs2244679	1.00[ASN][1000 genomes]
rs2244685	1.00[ASN][1000 genomes]
rs2244943	1.00[ASN][1000 genomes]
rs2255220	1.00[ASN][1000 genomes]
rs2255572	1.00[ASN][1000 genomes]
rs2255605	1.00[ASN][1000 genomes]
rs2255606	1.00[ASN][1000 genomes]
rs2255692	1.00[ASN][1000 genomes]
rs2255706	1.00[ASN][1000 genomes]
rs2590940	1.00[ASN][1000 genomes]
rs2841184	1.00[ASN][1000 genomes]
rs28416453	1.00[ASN][1000 genomes]
rs28464217	1.00[ASN][1000 genomes]
rs34236777	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4595322	1.00[ASN][1000 genomes]
rs4650141	1.00[ASN][1000 genomes]
rs56690886	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57867136	1.00[ASN][1000 genomes]
rs59526352	1.00[ASN][1000 genomes]
rs60276726	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61138734	1.00[ASN][1000 genomes]
rs61224710	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61464630	1.00[ASN][1000 genomes]
rs6657668	1.00[ASN][1000 genomes]
rs6690920	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72942866	1.00[ASN][1000 genomes]
rs72942886	1.00[ASN][1000 genomes]
rs72942900	1.00[ASN][1000 genomes]
rs72944803	1.00[ASN][1000 genomes]
rs72944848	0.82[AFR][1000 genomes]
rs72946915	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948923	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521173	1.00[ASN][1000 genomes]
rs7536612	1.00[ASN][1000 genomes]
rs9326103	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326104	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326105	1.00[ASN][1000 genomes]
rs986381	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422432	chr1:72821856-73148651	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv428101	chr1:73017520-73211351	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv871371	chr1:73048685-73152104	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv871636	chr1:73048685-73274919	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv871181	chr1:73084221-73305593	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73143400-73145200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:73143600-73145600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:73144200-73145600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links