Variant report

Variant	rs61138734
Chromosome Location	chr1:73117079-73117080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:73115458..73117504-chr1:73118558..73120505,2	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10465865	1.00[ASN][1000 genomes]
rs10465866	1.00[ASN][1000 genomes]
rs10889969	1.00[ASN][1000 genomes]
rs10889976	1.00[ASN][1000 genomes]
rs10889981	1.00[ASN][1000 genomes]
rs11209987	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11209989	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11209993	1.00[ASN][1000 genomes]
rs11209997	1.00[ASN][1000 genomes]
rs11209998	1.00[ASN][1000 genomes]
rs11210000	1.00[ASN][1000 genomes]
rs11210001	1.00[ASN][1000 genomes]
rs11210002	1.00[ASN][1000 genomes]
rs11210015	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210016	1.00[ASN][1000 genomes]
rs11210018	1.00[ASN][1000 genomes]
rs11210019	1.00[ASN][1000 genomes]
rs11210021	1.00[ASN][1000 genomes]
rs11210022	1.00[ASN][1000 genomes]
rs11210028	1.00[ASN][1000 genomes]
rs11210036	1.00[ASN][1000 genomes]
rs11210042	1.00[ASN][1000 genomes]
rs11803059	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807168	1.00[ASN][1000 genomes]
rs12062883	1.00[ASN][1000 genomes]
rs12066284	1.00[ASN][1000 genomes]
rs12066923	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12070137	1.00[ASN][1000 genomes]
rs12072129	1.00[ASN][1000 genomes]
rs12072443	1.00[ASN][1000 genomes]
rs12072444	1.00[ASN][1000 genomes]
rs12073769	1.00[ASN][1000 genomes]
rs12073811	1.00[ASN][1000 genomes]
rs12076822	1.00[ASN][1000 genomes]
rs12078724	1.00[ASN][1000 genomes]
rs12082218	1.00[ASN][1000 genomes]
rs12082422	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087633	1.00[ASN][1000 genomes]
rs12087817	1.00[ASN][1000 genomes]
rs12088885	1.00[ASN][1000 genomes]
rs12092131	1.00[ASN][1000 genomes]
rs12092187	1.00[ASN][1000 genomes]
rs13352999	1.00[ASN][1000 genomes]
rs1373915	1.00[ASN][1000 genomes]
rs17093152	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17093160	1.00[ASN][1000 genomes]
rs17093164	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17093275	1.00[ASN][1000 genomes]
rs17093297	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17093299	1.00[ASN][1000 genomes]
rs17093396	1.00[ASN][1000 genomes]
rs2017920	1.00[ASN][1000 genomes]
rs2244679	1.00[ASN][1000 genomes]
rs2244685	1.00[ASN][1000 genomes]
rs2244943	1.00[ASN][1000 genomes]
rs2255220	1.00[ASN][1000 genomes]
rs2255572	1.00[ASN][1000 genomes]
rs2255605	1.00[ASN][1000 genomes]
rs2255606	1.00[ASN][1000 genomes]
rs2255692	1.00[ASN][1000 genomes]
rs2255706	1.00[ASN][1000 genomes]
rs2590940	1.00[ASN][1000 genomes]
rs2841184	1.00[ASN][1000 genomes]
rs28416453	1.00[ASN][1000 genomes]
rs28464217	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34236777	1.00[ASN][1000 genomes]
rs4595322	1.00[ASN][1000 genomes]
rs4650141	1.00[ASN][1000 genomes]
rs56690886	1.00[ASN][1000 genomes]
rs57867136	1.00[ASN][1000 genomes]
rs59526352	1.00[ASN][1000 genomes]
rs60276726	1.00[ASN][1000 genomes]
rs61224710	1.00[ASN][1000 genomes]
rs61464630	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657668	1.00[ASN][1000 genomes]
rs6690920	1.00[ASN][1000 genomes]
rs72942866	1.00[ASN][1000 genomes]
rs72942886	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72942900	1.00[ASN][1000 genomes]
rs72944803	1.00[ASN][1000 genomes]
rs72946915	1.00[ASN][1000 genomes]
rs72948923	1.00[ASN][1000 genomes]
rs74090123	1.00[EUR][1000 genomes]
rs7521173	1.00[ASN][1000 genomes]
rs7536612	1.00[ASN][1000 genomes]
rs9326103	1.00[ASN][1000 genomes]
rs9326104	1.00[ASN][1000 genomes]
rs9326105	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs986381	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422432	chr1:72821856-73148651	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv428101	chr1:73017520-73211351	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv871371	chr1:73048685-73152104	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv871636	chr1:73048685-73274919	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2763560	chr1:73077448-73122262	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv871181	chr1:73084221-73305593	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73115000-73117200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:73115200-73117200	Enhancers	Fetal Lung	lung
3	chr1:73115200-73117800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:73115800-73117200	Enhancers	Fetal Stomach	stomach
5	chr1:73116200-73117200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:73116600-73117200	Enhancers	Brain Germinal Matrix	brain
7	chr1:73116600-73117200	Enhancers	Fetal Brain Female	brain
8	chr1:73116800-73117200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:73116800-73117200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:73117000-73117200	Enhancers	Fetal Muscle Leg	muscle
11	chr1:73117000-73117400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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