Variant report
| Variant | rs13352999 |
|---|---|
| Chromosome Location | chr1:73214924-73214925 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NEGR1-1 | chr1:73214849-73214959 | ENSG00000225087 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:88)
| rs_ID | r2[population] |
|---|---|
| rs10465865 | 1.00[ASN][1000 genomes] |
| rs10465866 | 1.00[ASN][1000 genomes] |
| rs10889969 | 1.00[ASN][1000 genomes] |
| rs10889976 | 1.00[ASN][1000 genomes] |
| rs10889981 | 1.00[ASN][1000 genomes] |
| rs11209987 | 1.00[ASN][1000 genomes] |
| rs11209989 | 1.00[ASN][1000 genomes] |
| rs11209993 | 1.00[ASN][1000 genomes] |
| rs11209997 | 1.00[ASN][1000 genomes] |
| rs11209998 | 1.00[ASN][1000 genomes] |
| rs11210000 | 1.00[ASN][1000 genomes] |
| rs11210001 | 1.00[ASN][1000 genomes] |
| rs11210002 | 1.00[ASN][1000 genomes] |
| rs11210015 | 1.00[ASN][1000 genomes] |
| rs11210016 | 1.00[ASN][1000 genomes] |
| rs11210018 | 1.00[ASN][1000 genomes] |
| rs11210019 | 1.00[ASN][1000 genomes] |
| rs11210021 | 1.00[ASN][1000 genomes] |
| rs11210022 | 1.00[ASN][1000 genomes] |
| rs11210028 | 1.00[ASN][1000 genomes] |
| rs11210036 | 1.00[ASN][1000 genomes] |
| rs11210042 | 1.00[ASN][1000 genomes] |
| rs11803059 | 1.00[ASN][1000 genomes] |
| rs11807168 | 1.00[ASN][1000 genomes] |
| rs12062883 | 1.00[ASN][1000 genomes] |
| rs12066284 | 1.00[ASN][1000 genomes] |
| rs12066923 | 1.00[ASN][1000 genomes] |
| rs12070137 | 1.00[ASN][1000 genomes] |
| rs12072129 | 1.00[ASN][1000 genomes] |
| rs12072443 | 1.00[ASN][1000 genomes] |
| rs12072444 | 1.00[ASN][1000 genomes] |
| rs12073769 | 1.00[ASN][1000 genomes] |
| rs12073811 | 1.00[ASN][1000 genomes] |
| rs12076822 | 1.00[ASN][1000 genomes] |
| rs12078724 | 1.00[ASN][1000 genomes] |
| rs12082218 | 1.00[ASN][1000 genomes] |
| rs12082422 | 1.00[ASN][1000 genomes] |
| rs12087633 | 1.00[ASN][1000 genomes] |
| rs12087817 | 1.00[ASN][1000 genomes] |
| rs12088885 | 1.00[ASN][1000 genomes] |
| rs12092131 | 1.00[ASN][1000 genomes] |
| rs12092187 | 1.00[ASN][1000 genomes] |
| rs1373915 | 1.00[ASN][1000 genomes] |
| rs17093152 | 1.00[ASN][1000 genomes] |
| rs17093160 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17093164 | 1.00[ASN][1000 genomes] |
| rs17093275 | 1.00[ASN][1000 genomes] |
| rs17093297 | 1.00[ASN][1000 genomes] |
| rs17093299 | 1.00[ASN][1000 genomes] |
| rs17093396 | 1.00[ASN][1000 genomes] |
| rs2017920 | 1.00[ASN][1000 genomes] |
| rs2244679 | 1.00[ASN][1000 genomes] |
| rs2244685 | 1.00[ASN][1000 genomes] |
| rs2244943 | 1.00[ASN][1000 genomes] |
| rs2255220 | 1.00[ASN][1000 genomes] |
| rs2255572 | 1.00[ASN][1000 genomes] |
| rs2255605 | 1.00[ASN][1000 genomes] |
| rs2255606 | 1.00[ASN][1000 genomes] |
| rs2255692 | 1.00[ASN][1000 genomes] |
| rs2255706 | 1.00[ASN][1000 genomes] |
| rs2590940 | 1.00[ASN][1000 genomes] |
| rs2841184 | 1.00[ASN][1000 genomes] |
| rs28416453 | 1.00[ASN][1000 genomes] |
| rs28464217 | 1.00[ASN][1000 genomes] |
| rs34236777 | 1.00[ASN][1000 genomes] |
| rs4595322 | 1.00[ASN][1000 genomes] |
| rs4650141 | 1.00[ASN][1000 genomes] |
| rs56690886 | 1.00[ASN][1000 genomes] |
| rs57867136 | 1.00[ASN][1000 genomes] |
| rs59526352 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60276726 | 1.00[ASN][1000 genomes] |
| rs61138734 | 1.00[ASN][1000 genomes] |
| rs61224710 | 1.00[ASN][1000 genomes] |
| rs61464630 | 1.00[ASN][1000 genomes] |
| rs6657668 | 1.00[ASN][1000 genomes] |
| rs6690920 | 1.00[ASN][1000 genomes] |
| rs72942866 | 1.00[ASN][1000 genomes] |
| rs72942886 | 1.00[ASN][1000 genomes] |
| rs72942900 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72944803 | 1.00[ASN][1000 genomes] |
| rs72946915 | 1.00[ASN][1000 genomes] |
| rs72948923 | 1.00[ASN][1000 genomes] |
| rs7521173 | 1.00[ASN][1000 genomes] |
| rs7536612 | 1.00[ASN][1000 genomes] |
| rs9326103 | 1.00[ASN][1000 genomes] |
| rs9326104 | 1.00[ASN][1000 genomes] |
| rs9326105 | 1.00[ASN][1000 genomes] |
| rs986381 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv871636 | chr1:73048685-73274919 | ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv871181 | chr1:73084221-73305593 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2757735 | chr1:73181612-73307170 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv2758941 | chr1:73181612-73307170 | Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv1013549 | chr1:73209040-73408373 | Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:73213000-73215000 | Enhancers | Brain Germinal Matrix | brain |
