Variant report

Variant	rs11801236
Chromosome Location	chr1:221842581-221842582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:221826366..221828507-chr1:221841172..221843520,2	MCF-7	breast:
2	chr1:221842453..221844829-chr1:221845406..221848131,2	MCF-7	breast:
3	chr1:221840278..221843127-chr1:221844989..221847688,2	MCF-7	breast:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10429944	0.98[AFR][1000 genomes]
rs10429945	0.98[AFR][1000 genomes]
rs10429946	0.98[AFR][1000 genomes]
rs10429957	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10429958	0.98[AFR][1000 genomes]
rs10429960	0.89[AFR][1000 genomes]
rs10429961	0.98[AFR][1000 genomes]
rs10429963	0.98[AFR][1000 genomes]
rs10429964	0.98[AFR][1000 genomes]
rs10863644	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10863645	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10863646	0.96[AFR][1000 genomes]
rs11118802	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11118807	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11118808	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11118809	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11118811	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11118812	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11118813	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11118814	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11118815	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11118816	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11118818	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11118819	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11118821	0.98[AFR][1000 genomes]
rs11577594	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586610	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587933	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11590288	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11590494	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11801223	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11805958	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11808469	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11808503	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11809144	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11809184	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11809818	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11810677	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11810697	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11811485	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11811644	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12023345	0.96[AFR][1000 genomes]
rs12024440	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12024464	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12025878	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12031670	0.98[AFR][1000 genomes]
rs12035928	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12036305	0.94[AFR][1000 genomes]
rs12041614	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12042290	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12408488	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12408495	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13375747	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13375841	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13376168	0.96[AFR][1000 genomes]
rs13376169	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376174	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13376254	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13376595	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1519464	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1519465	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1850831	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1914947	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1949508	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2056288	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056289	0.84[AFR][1000 genomes]
rs34494638	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs57852673	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs58897885	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60436564	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61817872	1.00[ASN][1000 genomes]
rs61817912	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61817913	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61817918	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61817919	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61817921	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61817923	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61817924	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61817925	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61817926	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61817941	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61817942	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61817945	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61817946	0.98[AFR][1000 genomes]
rs61817947	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61817948	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61817949	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61817950	1.00[ASN][1000 genomes]
rs6661401	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6686877	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6700214	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700504	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7355047	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7417317	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7517462	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221841200-221842600	Weak transcription	HSMM	muscle
2	chr1:221841200-221843600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:221841400-221842600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:221841400-221843000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:221841400-221843000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:221841400-221843000	Weak transcription	Osteobl	bone
7	chr1:221841600-221842600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:221841600-221842600	Weak transcription	GM12878-XiMat	blood
9	chr1:221841600-221842600	Weak transcription	NHDF-Ad	bronchial
10	chr1:221841600-221842800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:221841600-221843000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:221841600-221843000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:221841600-221843000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:221841600-221844800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:221841600-221848400	Weak transcription	Stomach Mucosa	stomach
16	chr1:221842000-221844600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:221842200-221846000	Enhancers	HMEC	breast

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