Variant report

Variant	rs61817872
Chromosome Location	chr1:221792105-221792106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11577594	1.00[ASN][1000 genomes]
rs11586610	1.00[ASN][1000 genomes]
rs11590288	1.00[ASN][1000 genomes]
rs11590494	1.00[ASN][1000 genomes]
rs11801223	1.00[ASN][1000 genomes]
rs11801236	1.00[ASN][1000 genomes]
rs11805958	1.00[ASN][1000 genomes]
rs11809144	1.00[ASN][1000 genomes]
rs11810677	1.00[ASN][1000 genomes]
rs13376169	1.00[ASN][1000 genomes]
rs2056288	1.00[ASN][1000 genomes]
rs61817918	1.00[ASN][1000 genomes]
rs61817919	1.00[ASN][1000 genomes]
rs61817921	1.00[ASN][1000 genomes]
rs61817923	1.00[ASN][1000 genomes]
rs61817925	1.00[ASN][1000 genomes]
rs61817942	1.00[ASN][1000 genomes]
rs61817949	1.00[ASN][1000 genomes]
rs61817950	1.00[ASN][1000 genomes]
rs6700214	1.00[ASN][1000 genomes]
rs7355047	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1011037	chr1:221756526-221809552	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221786200-221794200	Weak transcription	Psoas Muscle	Psoas
2	chr1:221791400-221792200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:221791800-221792200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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