Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11119313	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12402938	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12408760	0.84[EUR][1000 genomes]
rs12734177	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2235449	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2235452	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2235453	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2235454	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2235455	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34741019	0.80[EUR][1000 genomes]
rs35104617	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35458333	0.80[EUR][1000 genomes]
rs35498535	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35503098	0.97[EUR][1000 genomes]
rs35508847	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35553417	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35856006	0.80[EUR][1000 genomes]
rs55814069	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74157978	0.98[ASN][1000 genomes]
rs74157980	0.98[ASN][1000 genomes]
rs7517804	0.87[EUR][1000 genomes]
rs7517839	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7553120	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9787069	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209760600-209776400	Weak transcription	Fetal Lung	lung
2	chr1:209764200-209776600	Weak transcription	Ovary	ovary
3	chr1:209764200-209780400	Weak transcription	Fetal Brain Male	brain
4	chr1:209764600-209791200	Weak transcription	Brain Anterior Caudate	brain
5	chr1:209765400-209776800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:209768000-209773800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:209769600-209776400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:209769800-209781000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:209769800-209781200	Weak transcription	Spleen	Spleen
10	chr1:209770600-209771200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:209770600-209771200	Enhancers	NHEK	skin
12	chr1:209770800-209771200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:209770800-209771800	Enhancers	HUVEC	blood vessel

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