Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209763958..209764607-chr1:209920721..209921610,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11119313	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11801272	0.97[EUR][1000 genomes]
rs12402938	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12408760	0.87[EUR][1000 genomes]
rs12734177	0.94[EUR][1000 genomes]
rs2235449	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2235452	0.97[EUR][1000 genomes]
rs2235453	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2235454	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2235455	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34741019	0.83[EUR][1000 genomes]
rs35104617	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35458333	0.83[EUR][1000 genomes]
rs35498535	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35508847	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35553417	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35856006	0.83[EUR][1000 genomes]
rs55814069	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7517804	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7517839	0.97[EUR][1000 genomes]
rs7553120	0.95[EUR][1000 genomes]
rs9787069	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209760600-209776400	Weak transcription	Fetal Lung	lung
2	chr1:209761600-209765000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:209762800-209765000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:209762800-209765800	Weak transcription	Left Ventricle	heart
5	chr1:209763000-209765000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:209764000-209764600	Enhancers	Brain Cingulate Gyrus	brain
7	chr1:209764200-209764600	Enhancers	Brain Angular Gyrus	brain
8	chr1:209764200-209776600	Weak transcription	Ovary	ovary
9	chr1:209764200-209780400	Weak transcription	Fetal Brain Male	brain
10	chr1:209764400-209764600	Enhancers	Brain Anterior Caudate	brain
11	chr1:209764400-209765200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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