Variant report

Variant	rs11802744
Chromosome Location	chr1:174533089-174533090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174532659..174534724-chr1:174536541..174539409,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1013769	0.87[CHD][hapmap];1.00[LWK][hapmap]
rs10489258	0.87[CHD][hapmap]
rs10494492	0.87[CHD][hapmap]
rs10798310	0.87[CHD][hapmap]
rs10798314	0.87[CHD][hapmap]
rs10798315	0.87[CHD][hapmap]
rs10912779	0.87[CHD][hapmap]
rs10912821	0.87[CHD][hapmap]
rs10912823	0.87[CHD][hapmap]
rs10912829	0.87[CHD][hapmap]
rs11487399	0.87[CHD][hapmap]
rs11799704	0.87[CHD][hapmap]
rs11802691	1.00[LWK][hapmap]
rs11806996	0.87[CHD][hapmap]
rs12062483	0.87[CHD][hapmap]
rs12067463	0.87[CHD][hapmap]
rs12069134	0.87[CHD][hapmap]
rs12071794	0.87[CHD][hapmap]
rs12076548	0.87[CHD][hapmap]
rs12077381	0.87[CHD][hapmap]
rs12077529	0.87[CHD][hapmap]
rs12078960	0.87[CHD][hapmap]
rs12079334	0.87[CHD][hapmap]
rs12086693	0.87[CHD][hapmap]
rs12091056	0.87[CHD][hapmap]
rs1474575	0.87[CHD][hapmap]
rs162815	0.87[CHD][hapmap]
rs16847012	0.87[CHD][hapmap]
rs17842157	0.87[CHD][hapmap]
rs1883262	0.87[CHD][hapmap]
rs193082	0.87[CHD][hapmap]
rs2142632	0.87[CHD][hapmap]
rs2146564	0.87[CHD][hapmap]
rs2205937	0.87[CHD][hapmap]
rs2281010	0.87[CHD][hapmap]
rs2760057	0.87[CHD][hapmap]
rs2771401	0.87[CHD][hapmap]
rs2860955	0.87[CHD][hapmap]
rs2860959	0.87[CHD][hapmap]
rs332763	0.87[CHD][hapmap]
rs332764	0.87[CHD][hapmap]
rs332767	0.87[CHD][hapmap]
rs332768	0.87[CHD][hapmap]
rs332779	0.87[CHD][hapmap]
rs332786	0.87[CHD][hapmap]
rs332798	0.87[CHD][hapmap]
rs333422	0.87[CHD][hapmap]
rs333423	0.87[CHD][hapmap]
rs333436	0.87[CHD][hapmap]
rs333471	0.87[CHD][hapmap]
rs34409674	0.87[CHD][hapmap]
rs3920486	0.87[CHD][hapmap]
rs411665	0.87[CHD][hapmap]
rs41472847	0.87[CHD][hapmap]
rs4233181	0.87[CHD][hapmap]
rs4451598	0.87[CHD][hapmap]
rs458242	0.87[CHD][hapmap]
rs459078	0.87[CHD][hapmap]
rs4615901	0.87[CHD][hapmap]
rs464635	0.87[CHD][hapmap]
rs4651015	0.87[CHD][hapmap]
rs4651114	0.87[CHD][hapmap];1.00[LWK][hapmap]
rs4652365	0.87[CHD][hapmap]
rs4652422	0.87[CHD][hapmap]
rs4652460	0.87[CHD][hapmap]
rs4652500	0.87[CHD][hapmap]
rs4652513	0.87[CHD][hapmap]
rs4652652	0.87[CHD][hapmap]
rs56138951	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6656925	0.87[CHD][hapmap]
rs6658315	0.87[CHD][hapmap]
rs6674239	0.87[CHD][hapmap]
rs6677874	0.87[CHD][hapmap]
rs6681970	0.87[CHD][hapmap]
rs6682997	0.87[CHD][hapmap]
rs6689327	0.87[CHD][hapmap]
rs6691118	0.87[CHD][hapmap]
rs6701534	0.87[CHD][hapmap]
rs72715203	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72715206	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72715211	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72715282	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72717611	0.83[ASN][1000 genomes]
rs7515116	0.87[CHD][hapmap]
rs7530265	0.87[CHD][hapmap]
rs7536102	0.87[CHD][hapmap]
rs7536987	0.87[CHD][hapmap]
rs7537823	0.87[CHD][hapmap]
rs909533	0.87[CHD][hapmap]
rs926327	0.87[CHD][hapmap]
rs969472	0.87[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010069	chr1:174215293-174539512	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv872555	chr1:174343705-174565720	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
7	nsv1007667	chr1:174438778-174556953	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1009056	chr1:174457532-174549665	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv999295	chr1:174457532-174596961	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv534381	chr1:174468168-174656796	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv2757762	chr1:174469281-174569776	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2758979	chr1:174469281-174569776	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv548196	chr1:174525135-174559121	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174514800-174539400	Weak transcription	Ovary	ovary
2	chr1:174529800-174538200	Weak transcription	Primary B cells from peripheral blood	blood

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