Variant report

Variant	rs12086693
Chromosome Location	chr1:174496789-174496790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 268 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:252)

rs_ID	r²[population]
rs1013769	0.84[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10489255	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10489256	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10489258	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.87[ASN][1000 genomes]
rs10489260	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10489264	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs10494492	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10798310	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[ASN][1000 genomes]
rs10798311	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10798312	0.87[ASN][1000 genomes]
rs10798313	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10798314	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.81[TSI][hapmap];0.82[ASN][1000 genomes]
rs10798315	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[TSI][hapmap];0.87[ASN][1000 genomes]
rs10798319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10912766	0.88[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs10912772	0.87[ASN][1000 genomes]
rs10912774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10912775	0.89[CEU][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs10912776	0.87[ASN][1000 genomes]
rs10912777	0.84[ASN][1000 genomes]
rs10912778	0.87[ASN][1000 genomes]
rs10912779	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[ASN][1000 genomes]
rs10912782	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10912786	0.87[ASN][1000 genomes]
rs10912789	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10912791	0.89[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10912795	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10912799	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10912800	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.89[LWK][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10912806	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10912820	0.91[EUR][1000 genomes]
rs10912821	0.86[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10912822	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10912823	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10912828	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10912829	0.86[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11484645	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11487399	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11799535	0.87[ASN][1000 genomes]
rs11799704	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.81[TSI][hapmap];0.87[ASN][1000 genomes]
rs11801105	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs11802092	0.88[AFR][1000 genomes]
rs11802744	0.87[CHD][hapmap]
rs11805578	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs11806996	1.00[CHD][hapmap];0.88[JPT][hapmap]
rs11807229	0.97[ASN][1000 genomes]
rs11809482	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11810824	0.89[CEU][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap]
rs12058377	0.87[ASN][1000 genomes]
rs12059307	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12062016	0.81[AFR][1000 genomes]
rs12062170	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063545	0.80[EUR][1000 genomes]
rs12064126	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs12064743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12065326	0.87[ASN][1000 genomes]
rs12065454	0.89[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12065825	0.90[AFR][1000 genomes]
rs12067463	1.00[ASW][hapmap];0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12069134	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[ASN][1000 genomes]
rs12070095	0.87[ASN][1000 genomes]
rs12071794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12073751	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12074416	0.84[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.82[ASN][1000 genomes]
rs12074754	0.87[ASN][1000 genomes]
rs12076548	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12077381	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.87[ASN][1000 genomes]
rs12077529	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078960	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.87[ASN][1000 genomes]
rs12079334	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12079879	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs12080407	0.84[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.87[ASN][1000 genomes]
rs12080535	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12081012	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12081046	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12082012	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs12082139	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12083628	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12083972	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12084291	0.87[ASN][1000 genomes]
rs12084948	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12085652	0.89[AFR][1000 genomes]
rs12090860	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12091056	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12092768	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12093966	0.89[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12095629	0.87[ASN][1000 genomes]
rs12095679	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12097931	0.82[ASN][1000 genomes]
rs1474575	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[TSI][hapmap]
rs162815	0.85[EUR][1000 genomes]
rs16828481	0.87[ASN][1000 genomes]
rs16846938	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16846949	0.87[ASN][1000 genomes]
rs16847012	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.87[ASN][1000 genomes]
rs16847335	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs16847337	0.89[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs17842156	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs17842157	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1806329	0.87[ASN][1000 genomes]
rs1883262	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[ASN][1000 genomes]
rs193082	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];0.90[YRI][hapmap]
rs1989177	0.87[ASN][1000 genomes]
rs2012558	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2060158	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs2064150	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2072759	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2142632	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.81[TSI][hapmap]
rs2146564	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2205937	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.87[ASN][1000 genomes]
rs2281009	0.89[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2281010	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2281011	0.89[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2760058	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2771401	0.86[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2860954	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2860955	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[ASN][1000 genomes]
rs2860959	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[ASN][1000 genomes]
rs28628056	0.82[ASN][1000 genomes]
rs2901815	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2901817	0.87[ASN][1000 genomes]
rs2901818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2901820	0.89[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs332763	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs332764	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs332767	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs332768	0.86[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs332772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs332779	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];0.90[YRI][hapmap]
rs332781	0.89[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.83[MKK][hapmap];0.90[YRI][hapmap]
rs332784	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs332786	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];0.90[YRI][hapmap]
rs332798	0.85[EUR][1000 genomes]
rs332806	0.88[AFR][1000 genomes]
rs333422	0.85[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes]
rs333423	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs333437	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs333438	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs333452	0.88[AFR][1000 genomes]
rs333453	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs333454	0.94[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs333471	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34409674	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs35425383	0.87[ASN][1000 genomes]
rs3862941	0.89[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs3920486	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[TSI][hapmap]
rs395109	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs398350	0.89[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs399530	0.84[AFR][1000 genomes]
rs411665	0.86[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs41266050	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41472847	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4233181	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[ASN][1000 genomes]
rs4451598	0.86[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs458242	0.86[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.80[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs459078	0.85[EUR][1000 genomes]
rs4615901	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs464540	0.80[AFR][1000 genomes]
rs4651008	0.89[CEU][hapmap];1.00[CHD][hapmap]
rs4651015	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[ASN][1000 genomes]
rs4651016	0.87[ASN][1000 genomes]
rs4651019	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4651114	0.84[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4652365	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4652422	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[ASN][1000 genomes]
rs4652425	0.83[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4652460	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.81[TSI][hapmap];0.87[ASN][1000 genomes]
rs4652494	0.89[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4652500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4652511	0.89[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4652512	0.88[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4652513	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4652652	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4652669	0.81[AFR][1000 genomes]
rs467437	0.86[ASW][hapmap];0.89[CEU][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.81[MEX][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs5015737	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55748748	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55945681	0.90[AFR][1000 genomes]
rs56148594	0.87[ASN][1000 genomes]
rs56200626	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56213002	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56292878	0.91[EUR][1000 genomes]
rs56407387	0.87[ASN][1000 genomes]
rs57512497	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57953555	0.87[ASN][1000 genomes]
rs58750544	0.87[ASN][1000 genomes]
rs60409344	0.82[ASN][1000 genomes]
rs61218633	0.82[ASN][1000 genomes]
rs61624206	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6656925	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];0.87[ASN][1000 genomes]
rs6658315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6663959	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6665535	0.89[CEU][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6667107	0.89[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes]
rs6668096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6674239	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.81[TSI][hapmap];0.87[ASN][1000 genomes]
rs6677262	0.87[ASN][1000 genomes]
rs6677874	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6681970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6682070	0.89[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6682997	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6684141	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs6684688	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[ASN][1000 genomes]
rs6689153	0.86[AFR][1000 genomes]
rs6689327	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.81[TSI][hapmap];0.87[ASN][1000 genomes]
rs6689589	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6691118	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6692173	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696945	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6699142	0.82[ASN][1000 genomes]
rs6699697	0.87[ASN][1000 genomes]
rs6701534	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.82[ASN][1000 genomes]
rs6701619	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6701911	0.87[ASN][1000 genomes]
rs72713537	0.87[ASN][1000 genomes]
rs72713540	0.87[ASN][1000 genomes]
rs72713553	0.82[ASN][1000 genomes]
rs72713583	0.87[ASN][1000 genomes]
rs72713584	0.87[ASN][1000 genomes]
rs72713586	0.87[ASN][1000 genomes]
rs72713591	0.87[ASN][1000 genomes]
rs72713601	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72713602	0.87[ASN][1000 genomes]
rs72715204	0.87[ASN][1000 genomes]
rs72715216	0.81[EUR][1000 genomes]
rs72715218	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72715224	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72715226	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72715237	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74126805	0.87[ASN][1000 genomes]
rs74128393	0.87[ASN][1000 genomes]
rs7413513	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7414200	0.89[CEU][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs7515116	0.89[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.81[TSI][hapmap];0.87[ASN][1000 genomes]
rs7516353	0.82[AFR][1000 genomes]
rs7522253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7530265	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7535845	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7536102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7536987	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7537823	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7542775	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7550472	0.89[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7554728	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7554740	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909533	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs926327	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[ASN][1000 genomes]
rs926349	0.87[ASN][1000 genomes]
rs969472	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.81[TSI][hapmap];0.87[ASN][1000 genomes]
rs9729907	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9730220	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800060	chr1:174132703-174501836	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1010069	chr1:174215293-174539512	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv872555	chr1:174343705-174565720	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1003113	chr1:174367687-174499155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv535209	chr1:174367687-174499155	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
10	nsv1007667	chr1:174438778-174556953	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1009056	chr1:174457532-174549665	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv999295	chr1:174457532-174596961	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv534381	chr1:174468168-174656796	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv548195	chr1:174469002-174519276	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2757762	chr1:174469281-174569776	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv2758979	chr1:174469281-174569776	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs12086693	TNR	cis	parietal	SCAN
rs12086693	MRPS14	cis	lymphoblastoid	seeQTL
rs12086693	MRPS14	cis	parietal	SCAN
rs12086693	RC3H1	cis	parietal	SCAN
rs12086693	C1orf105	cis	cerebellum	SCAN
rs12086693	RABGAP1L	cis	Esophagus Muscularis	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174488600-174499000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:174490200-174508400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:174492200-174499400	Weak transcription	Primary B cells from cord blood	blood

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