Variant report

Variant	rs3862941
Chromosome Location	chr1:174658556-174658557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174657293..174659127-chr1:174660705..174662538,2	K562	blood:

Extended variants
information (count: 270 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:266)

rs_ID	r²[population]
rs1012182	0.81[EUR][1000 genomes]
rs1013769	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs10489264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10494492	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10798319	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10798324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10798327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs10912800	0.85[CEU][hapmap]
rs10912817	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912823	0.85[CEU][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10912828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs10912853	0.80[EUR][1000 genomes]
rs10912855	0.81[EUR][1000 genomes]
rs11487399	0.85[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs11800350	0.86[EUR][1000 genomes]
rs11802092	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11805578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11806996	0.89[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11807229	0.86[AFR][1000 genomes]
rs11809803	0.84[EUR][1000 genomes]
rs11810508	0.84[EUR][1000 genomes]
rs12062016	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12062483	0.85[CEU][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs12063093	0.81[EUR][1000 genomes]
rs12063545	0.95[ASN][1000 genomes]
rs12064403	0.86[ASN][1000 genomes]
rs12064743	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12064749	0.84[ASN][1000 genomes]
rs12065454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12065825	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12067463	0.81[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12071794	0.85[CEU][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs12077529	0.85[CEU][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs12078839	0.84[EUR][1000 genomes]
rs12079118	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12079757	0.87[ASN][1000 genomes]
rs12079879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12080535	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12081046	0.85[CEU][hapmap]
rs12082012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12082139	0.92[ASN][1000 genomes]
rs12083628	0.92[ASN][1000 genomes]
rs12085652	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12086693	0.89[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs12093966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12094876	0.81[EUR][1000 genomes]
rs1231826	0.84[EUR][1000 genomes]
rs1231827	0.84[EUR][1000 genomes]
rs1231829	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs1329281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1474575	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149099	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540207	0.81[GIH][hapmap]
rs1613634	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1618207	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1618408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1622802	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs162815	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1653630	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1653634	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16847335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16847337	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301853	0.83[GIH][hapmap]
rs17302033	0.83[EUR][1000 genomes]
rs1754352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs1754353	0.91[EUR][1000 genomes]
rs1754354	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs1754360	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17842156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17842157	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793295	0.93[EUR][1000 genomes]
rs1793298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793305	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs1793307	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1793310	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1793316	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs1793318	0.90[EUR][1000 genomes]
rs1793320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs1813136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1883139	0.85[EUR][1000 genomes]
rs1894199	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs1894201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs1923818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs193082	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2003378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes]
rs2060158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2092084	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2142632	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2146564	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2156854	0.88[JPT][hapmap]
rs2163628	0.92[EUR][1000 genomes]
rs2183202	0.95[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]
rs2281009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2281010	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs2281011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2568096	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2568098	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2760057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs2760058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2771401	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs2861003	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2861005	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861006	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2981893	0.85[EUR][1000 genomes]
rs2981896	0.84[EUR][1000 genomes]
rs2987872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs2987873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2987875	0.85[EUR][1000 genomes]
rs2987876	0.83[EUR][1000 genomes]
rs2987880	0.83[EUR][1000 genomes]
rs3117838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3117843	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3118982	0.85[EUR][1000 genomes]
rs3118986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs3118987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs3118988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3118990	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs332763	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs332764	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs332767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs332768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs332772	0.85[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs332776	0.87[EUR][1000 genomes]
rs332779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs332781	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs332782	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs332784	0.85[CEU][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs332786	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs332787	0.86[EUR][1000 genomes]
rs332793	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs332797	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs332798	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs332800	0.94[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs332801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs332802	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs332804	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs332806	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333422	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333423	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs333432	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333436	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333437	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs333438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333452	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333453	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs333454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs333471	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34409674	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36127331	0.88[EUR][1000 genomes]
rs3920486	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs392307	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs395109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs398350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399530	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs411665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41266050	0.86[AFR][1000 genomes]
rs4451598	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4480415	0.88[JPT][hapmap];1.00[MKK][hapmap];0.82[EUR][1000 genomes]
rs4562683	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs458242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs459078	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs460878	0.96[EUR][1000 genomes]
rs4615901	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs464540	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs464635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4651103	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4651114	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4652494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4652500	0.85[CEU][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs4652511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4652512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs4652513	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs4652652	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4652669	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4652797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs467437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55643907	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55667039	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55688014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55748748	0.86[AFR][1000 genomes]
rs55793234	0.81[EUR][1000 genomes]
rs55844798	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55945681	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56200626	0.86[AFR][1000 genomes]
rs56260545	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57289077	0.85[EUR][1000 genomes]
rs60811893	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61624206	0.92[ASN][1000 genomes]
rs6425298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs6425300	0.85[EUR][1000 genomes]
rs6425301	0.85[EUR][1000 genomes]
rs6425302	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs6658315	0.89[CEU][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs6665535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs6667107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6668096	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs6671196	0.82[EUR][1000 genomes]
rs6671782	0.81[EUR][1000 genomes]
rs6675515	0.86[ASN][1000 genomes]
rs6677874	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6681970	0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs6682070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6682997	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs66836419	0.83[EUR][1000 genomes]
rs6684229	0.81[EUR][1000 genomes]
rs6684515	0.81[EUR][1000 genomes]
rs6686872	0.81[EUR][1000 genomes]
rs6687616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.84[EUR][1000 genomes]
rs6689153	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6690754	0.85[EUR][1000 genomes]
rs6691118	0.85[CEU][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6693979	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs6696465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67203477	0.83[EUR][1000 genomes]
rs67903803	0.83[EUR][1000 genomes]
rs72715216	0.86[AFR][1000 genomes]
rs72715218	0.86[AFR][1000 genomes]
rs72715226	0.86[AFR][1000 genomes]
rs72715237	0.81[AFR][1000 genomes]
rs72715240	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72715245	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72715253	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72715255	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72715259	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72715260	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72715262	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72715273	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715281	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72715292	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715294	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715300	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717608	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717616	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717617	0.89[EUR][1000 genomes]
rs72717618	0.92[EUR][1000 genomes]
rs72717630	0.84[EUR][1000 genomes]
rs72717649	0.83[EUR][1000 genomes]
rs72717650	0.83[EUR][1000 genomes]
rs72717653	0.83[EUR][1000 genomes]
rs72717661	0.82[EUR][1000 genomes]
rs7414200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7516353	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516410	0.83[EUR][1000 genomes]
rs7521109	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7522253	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs7530265	0.85[CEU][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7536102	0.85[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7537823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs7542775	0.92[ASN][1000 genomes]
rs7543147	0.81[EUR][1000 genomes]
rs7547658	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs7550472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs909533	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap]
rs913686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs913687	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs913688	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9425787	0.85[EUR][1000 genomes]
rs989424	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs3862941	RC3H1	cis	parietal	SCAN
rs3862941	RP11-160H22.5	cis	Thyroid	GTEx
rs3862941	MRPS14	cis	lymphoblastoid	seeQTL
rs3862941	TNR	cis	parietal	SCAN
rs3862941	RABGAP1L	cis	Esophagus Muscularis	GTEx
rs3862941	MRPS14	cis	parietal	SCAN
rs3862941	SLC19A2	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174607600-174677800	Weak transcription	Primary B cells from cord blood	blood
2	chr1:174646800-174677600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:174646800-174680400	Weak transcription	Ovary	ovary
4	chr1:174648000-174660400	Weak transcription	Esophagus	oesophagus
5	chr1:174648400-174665200	Weak transcription	Left Ventricle	heart
6	chr1:174649200-174668400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:174651200-174664600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr1:174651400-174665200	Weak transcription	Lung	lung
9	chr1:174651800-174673000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr1:174651800-174677400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:174652000-174660200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:174652200-174658600	Weak transcription	Fetal Intestine Small	intestine
13	chr1:174652400-174677400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:174652400-174678800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr1:174653800-174669400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr1:174654400-174665200	Weak transcription	Primary T cells from cord blood	blood
17	chr1:174654400-174668200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr1:174657000-174669400	Weak transcription	GM12878-XiMat	blood
19	chr1:174657600-174660200	Enhancers	HepG2	liver
20	chr1:174658000-174658800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:174658000-174659400	Enhancers	Fetal Intestine Large	intestine

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Variant report

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