The 2.0 version of rSNPBase

Variant report

Variant rs72717616
Chromosome Location chr1:174781849-174781850
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:174769800-174787600 Weak transcription Pancreas Pancrea
2 chr1:174770000-174783000 Weak transcription Ovary ovary
3 chr1:174770000-174783600 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr1:174770000-174784200 Weak transcription HSMM muscle
5 chr1:174770000-174794200 Weak transcription Fetal Thymus thymus
6 chr1:174770200-174784000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr1:174770200-174788200 Weak transcription Primary T cells from cord blood blood
8 chr1:174770400-174782000 Weak transcription Fetal Intestine Large intestine
9 chr1:174770400-174784200 Weak transcription Primary B cells from cord blood blood
10 chr1:174770400-174784400 Weak transcription Primary hematopoietic stem cells blood
11 chr1:174770800-174783600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr1:174770800-174786400 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr1:174770800-174787600 Weak transcription Fetal Stomach stomach
14 chr1:174771600-174787400 Weak transcription Fetal Brain Male brain
15 chr1:174772200-174796600 Weak transcription Primary T helper cells PMA-I stimulated --
16 chr1:174772600-174784200 Weak transcription Brain Inferior Temporal Lobe brain
17 chr1:174772600-174784400 Weak transcription Brain Anterior Caudate brain
18 chr1:174777200-174783000 Weak transcription Brain Cingulate Gyrus brain
19 chr1:174777600-174786000 Weak transcription Left Ventricle heart
20 chr1:174777600-174799800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr1:174778600-174783800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr1:174779000-174782000 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr1:174779400-174784400 Weak transcription Brain Substantia Nigra brain
24 chr1:174779400-174786000 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr1:174779600-174782000 Weak transcription HUES48 Cell Line embryonic stem cell
26 chr1:174779600-174784000 Weak transcription Brain Angular Gyrus brain
27 chr1:174779600-174784200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr1:174780400-174783800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:174780600-174783400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
30 chr1:174780600-174783400 Weak transcription GM12878-XiMat blood
31 chr1:174780800-174783600 Weak transcription NHEK skin
32 chr1:174781200-174782200 Enhancers Fetal Intestine Small intestine
33 chr1:174781200-174782200 Enhancers Stomach Mucosa stomach
34 chr1:174781200-174782400 Enhancers NHLF lung
35 chr1:174781200-174782600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
36 chr1:174781200-174782600 Strong transcription Liver Liver
37 chr1:174781200-174782600 Enhancers HepG2 liver
38 chr1:174781400-174782200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
39 chr1:174781400-174782200 Enhancers Small Intestine intestine
40 chr1:174781400-174782400 Strong transcription Primary B cells from peripheral blood blood
41 chr1:174781600-174782000 Enhancers Duodenum Mucosa Duodenum
42 chr1:174781600-174782400 Strong transcription Primary T helper cells fromperipheralblood blood
43 chr1:174781600-174782800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
44 chr1:174781600-174784200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
45 chr1:174781800-174782200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr1:174781800-174782200 Strong transcription Primary T regulatory cells fromperipheralblood blood
47 chr1:174781800-174782400 Strong transcription HSMMtube muscle
48 chr1:174781800-174782600 Enhancers HUES64 Cell Line embryonic stem cell
49 chr1:174781800-174783000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr1:174781800-174787000 Weak transcription Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015