Variant report

Variant	rs1793310
Chromosome Location	chr1:174739924-174739925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:174738942..174742917-chr1:174963137..174966746,3	MCF-7	breast:
2	chr1:174735208..174740631-chr1:174966337..174969324,7	MCF-7	breast:
3	chr1:174738094..174740813-chr1:174741842..174744750,2	K562	blood:
4	chr1:174739087..174740946-chr1:174743005..174745287,2	K562	blood:
5	chr1:174735393..174743353-chr1:174964672..174971853,16	K562	blood:
6	chr1:174737719..174739960-chr1:175175568..175177082,2	K562	blood:
7	chr1:174738634..174740164-chr1:175067816..175070617,2	K562	blood:
8	chr1:174737447..174741477-chr1:174966880..174970168,5	MCF-7	breast:
9	chr1:174736386..174740944-chr1:174964309..174969947,11	K562	blood:
10	chr1:174566765..174568988-chr1:174739021..174740535,2	K562	blood:
11	chr1:174738859..174740087-chr1:175094536..175095080,4	K562	blood:
12	chr1:174738784..174740555-chr1:174951842..174953064,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000252552	Chromatin interaction
ENSG00000116161	Chromatin interaction

Extended variants
information (count: 214 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:209)

rs_ID	r²[population]
rs1012182	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10489264	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10494492	0.85[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10798324	0.85[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10798327	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.82[ASN][1000 genomes]
rs10912820	0.88[EUR][1000 genomes]
rs10912821	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap]
rs10912822	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs10912823	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10912828	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs10912829	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap]
rs10912843	0.85[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap]
rs10912853	0.80[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs10912854	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs11800350	0.82[ASN][1000 genomes]
rs11805578	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs11806996	1.00[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap]
rs11809803	0.82[ASN][1000 genomes]
rs11810508	0.82[ASN][1000 genomes]
rs12063093	0.82[ASN][1000 genomes]
rs12067463	0.92[ASW][hapmap];0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12077529	0.85[EUR][1000 genomes]
rs12078839	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12079879	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12080535	0.88[EUR][1000 genomes]
rs12082012	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs12082139	0.90[EUR][1000 genomes]
rs12083628	0.88[EUR][1000 genomes]
rs12094876	0.80[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1231826	0.82[ASN][1000 genomes]
rs1231827	0.82[ASN][1000 genomes]
rs1231829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1329281	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs149099	0.82[ASN][1000 genomes]
rs1540207	0.81[LWK][hapmap]
rs1613634	0.85[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1618207	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1618408	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1622802	0.85[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs162815	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1653630	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1653634	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1653636	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16847335	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16847337	0.85[CEU][hapmap];0.87[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16847624	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17302033	0.80[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs17302165	0.86[JPT][hapmap]
rs1754352	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.82[ASN][1000 genomes]
rs1754353	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1754354	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1754360	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17842156	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17842157	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1793292	0.85[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.87[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1793294	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1793295	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1793298	0.85[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1793305	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.82[ASN][1000 genomes]
rs1793307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793313	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1793315	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1793316	0.85[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1793318	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1793320	0.85[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1813135	0.82[EUR][1000 genomes]
rs1813136	0.85[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1883139	0.82[ASN][1000 genomes]
rs1894198	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1894199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1894201	0.84[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.82[ASN][1000 genomes]
rs1894680	1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1923818	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs193082	0.85[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2003378	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2060158	0.84[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2146564	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2156853	0.91[ASW][hapmap];0.81[LWK][hapmap];0.89[MKK][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2156854	0.82[ASW][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.86[MKK][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2157541	1.00[JPT][hapmap]
rs2163628	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2183202	0.80[CEU][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2568096	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2568098	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2760057	0.85[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2760058	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs2771401	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.80[TSI][hapmap];0.90[YRI][hapmap];0.82[ASN][1000 genomes]
rs2860725	0.85[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2861005	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2861006	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2981892	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2981893	0.82[ASN][1000 genomes]
rs2981896	0.82[ASN][1000 genomes]
rs2987872	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];0.82[ASN][1000 genomes]
rs2987873	0.84[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2987875	0.82[ASN][1000 genomes]
rs2987876	0.82[ASN][1000 genomes]
rs3117838	0.85[CEU][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3117843	0.80[EUR][1000 genomes]
rs3118982	0.82[ASN][1000 genomes]
rs3118986	0.84[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3118987	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs3118988	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs3118990	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs332763	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs332764	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs332767	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs332768	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.80[TSI][hapmap];0.86[YRI][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs332772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs332779	0.84[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs332781	0.85[ASW][hapmap];0.85[CEU][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.89[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs332782	0.82[EUR][1000 genomes]
rs332784	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs332786	0.85[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs332787	0.92[ASN][1000 genomes]
rs332793	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs332797	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs332798	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs332800	0.85[ASW][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs332801	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs332806	0.82[ASN][1000 genomes]
rs333422	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.88[MKK][hapmap];0.83[TSI][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs333423	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs333432	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs333436	0.85[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs333437	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs333438	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs333452	0.82[ASN][1000 genomes]
rs333453	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs333454	0.89[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs333471	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36127331	0.87[AFR][1000 genomes]
rs36155622	0.81[AFR][1000 genomes]
rs3862941	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs392307	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs395109	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs398350	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs399530	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs411665	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap];0.82[ASN][1000 genomes]
rs4359076	0.91[AFR][1000 genomes]
rs4451598	0.85[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap]
rs4480415	0.88[JPT][hapmap]
rs458242	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs459078	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs460878	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4615901	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs464540	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs464635	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.83[TSI][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4651114	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4651205	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4651231	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs4651235	0.82[ASN][1000 genomes]
rs4652652	0.84[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs4652797	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs467437	0.85[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55667039	0.82[ASN][1000 genomes]
rs55688014	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55844798	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56292878	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60811893	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61624206	0.88[EUR][1000 genomes]
rs6425298	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.83[MKK][hapmap];0.82[ASN][1000 genomes]
rs6425300	0.82[ASN][1000 genomes]
rs6425301	0.82[ASN][1000 genomes]
rs6425302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6425303	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs6667107	0.85[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs6670315	0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs6675528	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs6677874	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6684515	0.84[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs6686872	0.82[ASN][1000 genomes]
rs6687616	0.85[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs6690754	0.82[ASN][1000 genomes]
rs6691118	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.88[EUR][1000 genomes]
rs6692173	0.85[EUR][1000 genomes]
rs6693979	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];0.82[ASN][1000 genomes]
rs6696465	0.85[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6697561	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6700953	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67054007	0.82[ASN][1000 genomes]
rs72715273	0.82[ASN][1000 genomes]
rs72715281	0.80[EUR][1000 genomes]
rs72715292	0.97[ASN][1000 genomes]
rs72715294	0.97[ASN][1000 genomes]
rs72715300	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72717608	0.97[ASN][1000 genomes]
rs72717616	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72717617	0.92[ASN][1000 genomes]
rs72717618	0.87[ASN][1000 genomes]
rs72717630	0.82[ASN][1000 genomes]
rs72717637	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72717650	0.82[ASN][1000 genomes]
rs72717670	0.82[ASN][1000 genomes]
rs7514183	0.85[EUR][1000 genomes]
rs7516353	0.82[ASN][1000 genomes]
rs7516410	0.84[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs7521109	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7530265	0.88[EUR][1000 genomes]
rs7542775	0.88[EUR][1000 genomes]
rs7543147	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7547658	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.82[ASN][1000 genomes]
rs7554728	0.85[EUR][1000 genomes]
rs7554740	0.85[EUR][1000 genomes]
rs913686	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.82[ASN][1000 genomes]
rs913687	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs913688	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425787	0.82[ASN][1000 genomes]
rs989424	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv548197	chr1:174731596-174741017	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv548198	chr1:174731596-174800872	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1793310	MRPS14	cis	parietal	SCAN
rs1793310	TNR	cis	parietal	SCAN
rs1793310	C1orf105	cis	cerebellum	SCAN
rs1793310	RABGAP1L	cis	Esophagus Muscularis	GTEx
rs1793310	RC3H1	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174711800-174745600	Weak transcription	Primary B cells from cord blood	blood
2	chr1:174737600-174741800	Weak transcription	Fetal Intestine Large	intestine
3	chr1:174737600-174744200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:174737800-174741800	Weak transcription	Fetal Intestine Small	intestine
5	chr1:174738800-174744400	Enhancers	Liver	Liver
6	chr1:174739400-174740200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:174739600-174740000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr1:174739600-174740400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:174739800-174740000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:174739800-174740000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:174739800-174740200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:174739800-174740200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr1:174739800-174740400	Enhancers	H1 Cell Line	embryonic stem cell

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Variant report

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