Variant report

Variant	rs6425298
Chromosome Location	chr1:174841775-174841776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr1:174841647-174842099	K562	blood:	n/a	n/a
2	GATA2	chr1:174841737-174842264	K562	blood:	n/a	n/a
3	CEBPD	chr1:174841746-174842280	K562	blood:	n/a	n/a
4	TEAD4	chr1:174841679-174842292	K562	blood:	n/a	n/a
5	TEAD4	chr1:174841724-174842292	K562	blood:	n/a	n/a
6	STAT5A	chr1:174841757-174842325	K562	blood:	n/a	n/a
7	RCOR1	chr1:174841769-174842254	K562	blood:	n/a	n/a
8	CBX3	chr1:174841712-174842277	K562	blood:	n/a	n/a
9	POLR2A	chr1:174841760-174842214	K562	blood:	n/a	n/a
10	NR2F2	chr1:174841670-174842346	K562	blood:	n/a	n/a
11	TAL1	chr1:174841719-174842301	K562	blood:	n/a	n/a
12	CREB1	chr1:174841732-174842305	K562	blood:	n/a	n/a
13	PML	chr1:174841753-174842240	K562	blood:	n/a	n/a
14	GATA1	chr1:174841716-174842209	PBDE	blood:	n/a	n/a
15	TRIM28	chr1:174841702-174842312	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:174793359..174795191-chr1:174840553..174843195,2	MCF-7	breast:
2	chr1:174838711..174843709-chr1:174844718..174847483,6	K562	blood:
3	chr1:174839381..174842561-chr1:174854989..174856827,3	K562	blood:
4	chr1:174838028..174843892-chr1:174965943..174969167,5	K562	blood:
5	chr1:174840446..174846237-chr1:174965266..174970099,5	MCF-7	breast:
6	chr1:174838711..174843357-chr1:174844135..174848349,5	K562	blood:

No data

Variant related genes	Relation type
RABGAP1L	TF binding region
ENSG00000152061	Chromatin interaction
ENSG00000252552	Chromatin interaction
ENSG00000116161	Chromatin interaction

Extended variants
information (count: 207 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:206)

rs_ID	r²[population]
rs1012182	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1034462	0.87[CHD][hapmap];0.90[GIH][hapmap];0.80[TSI][hapmap];0.81[ASN][1000 genomes]
rs10494492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs1058741	0.82[GIH][hapmap];0.81[ASN][1000 genomes]
rs10798324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10798327	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912828	0.81[EUR][1000 genomes]
rs10912829	0.81[EUR][1000 genomes]
rs10912843	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912853	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912854	0.85[CEU][hapmap]
rs10912855	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11800350	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11806066	0.89[ASN][1000 genomes]
rs11806996	0.81[EUR][1000 genomes]
rs11809803	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11810508	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063093	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12065825	0.81[EUR][1000 genomes]
rs12078839	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.96[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12094876	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1231826	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1231827	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1231829	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.95[LWK][hapmap];0.88[MKK][hapmap];0.80[TSI][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1329281	1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs149099	0.81[EUR][1000 genomes]
rs1540207	0.81[GIH][hapmap];0.85[MKK][hapmap];0.84[EUR][1000 genomes]
rs1613634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1618207	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1618408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1622802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs162815	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.86[MKK][hapmap];0.82[ASN][1000 genomes]
rs1653630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1653634	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16847335	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs16847337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs16847624	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17302033	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];0.87[TSI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17302165	1.00[CHB][hapmap]
rs17302367	0.81[ASN][1000 genomes]
rs1754350	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1754352	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754353	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1754354	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754360	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.83[MKK][hapmap];0.82[ASN][1000 genomes]
rs17842156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs17842157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs1793292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793295	0.88[EUR][1000 genomes]
rs1793298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793305	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793307	0.85[CEU][hapmap];0.82[ASN][1000 genomes]
rs1793310	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.83[MKK][hapmap];0.82[ASN][1000 genomes]
rs1793313	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1793316	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1793318	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1793320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs1813136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1883139	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894198	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1894199	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.95[LWK][hapmap];0.91[MKK][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894201	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894680	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1923818	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs193082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs2003378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060158	0.84[EUR][1000 genomes]
rs2146564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs2156854	0.81[MKK][hapmap]
rs2157541	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs2157567	0.81[ASN][1000 genomes]
rs2163628	0.90[EUR][1000 genomes]
rs2183202	1.00[CEU][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2568096	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2568098	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2760057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs2760058	0.81[EUR][1000 genomes]
rs2771401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2860725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2861005	0.86[EUR][1000 genomes]
rs2861006	0.86[EUR][1000 genomes]
rs2981892	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2981893	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981896	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987872	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987875	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987876	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987880	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3117838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3117843	0.86[EUR][1000 genomes]
rs3118982	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3118988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap]
rs3118990	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs332763	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.83[MKK][hapmap]
rs332764	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.83[MKK][hapmap]
rs332767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs332768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs332772	0.85[CEU][hapmap]
rs332779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs332781	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs332782	0.87[EUR][1000 genomes]
rs332784	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];0.83[MKK][hapmap]
rs332786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs332793	0.85[EUR][1000 genomes]
rs332797	0.84[EUR][1000 genomes]
rs332798	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.83[MKK][hapmap]
rs332800	1.00[CEU][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs332801	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs332802	0.80[EUR][1000 genomes]
rs332806	0.81[EUR][1000 genomes]
rs333422	0.87[EUR][1000 genomes]
rs333432	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs333452	0.83[EUR][1000 genomes]
rs333454	0.83[EUR][1000 genomes]
rs333471	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.83[MKK][hapmap]
rs36127331	0.85[EUR][1000 genomes]
rs3766697	0.81[ASN][1000 genomes]
rs3862941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs392307	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs395109	0.81[EUR][1000 genomes]
rs398350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs399530	0.87[EUR][1000 genomes]
rs411665	0.84[EUR][1000 genomes]
rs4480415	0.82[EUR][1000 genomes]
rs458242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs459078	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.86[MKK][hapmap];0.82[ASN][1000 genomes]
rs460878	0.87[EUR][1000 genomes]
rs464540	0.86[EUR][1000 genomes]
rs464635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4651114	0.81[EUR][1000 genomes]
rs4651205	0.81[CEU][hapmap];0.97[ASN][1000 genomes]
rs4651231	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4651235	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4652797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs467437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs55667039	0.85[EUR][1000 genomes]
rs55688014	0.86[EUR][1000 genomes]
rs55774740	0.81[ASN][1000 genomes]
rs55793234	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55844798	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57289077	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58030712	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60482554	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60811893	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6425300	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425301	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425302	0.85[CEU][hapmap];0.92[YRI][hapmap]
rs6425303	0.81[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap]
rs6425304	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6425306	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6667107	0.81[EUR][1000 genomes]
rs6670315	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap]
rs6671196	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6671272	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6671782	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6675528	0.81[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap]
rs66836419	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6684229	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6684515	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6686872	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689153	0.81[EUR][1000 genomes]
rs6690754	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693979	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6697561	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.84[TSI][hapmap]
rs6700953	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67054007	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67133776	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67203477	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67903803	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72715273	0.81[EUR][1000 genomes]
rs72715281	0.86[EUR][1000 genomes]
rs72715292	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715294	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715300	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717608	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717616	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717617	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72717618	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717630	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717637	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72717649	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72717650	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717653	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72717661	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72717670	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74128535	0.81[ASN][1000 genomes]
rs7516353	0.81[EUR][1000 genomes]
rs7516410	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7521109	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7531032	0.81[ASN][1000 genomes]
rs7543147	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547658	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554767	0.81[ASN][1000 genomes]
rs913686	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs913687	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.86[MKK][hapmap];0.80[TSI][hapmap];0.82[ASN][1000 genomes]
rs913688	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9425787	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989424	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6425298	TNR	cis	parietal	SCAN
rs6425298	MRPS14	Cis_1M	lymphoblastoid	RTeQTL
rs6425298	RABGAP1L	cis	Esophagus Muscularis	GTEx
rs6425298	SLC19A2	cis	cerebellum	SCAN
rs6425298	RC3H1	cis	parietal	SCAN
rs6425298	MRPS14	cis	parietal	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174819200-174843600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:174832000-174843000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:174836800-174843600	Weak transcription	Left Ventricle	heart
4	chr1:174838600-174843400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:174838600-174847400	Weak transcription	Esophagus	oesophagus
6	chr1:174839600-174843400	Weak transcription	Stomach Mucosa	stomach
7	chr1:174840000-174843600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr1:174840200-174842200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr1:174840200-174843000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:174840400-174841800	Enhancers	NHEK	skin
11	chr1:174840400-174842200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:174840400-174842400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:174840600-174841800	Enhancers	HMEC	breast
14	chr1:174840600-174842000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr1:174840600-174843000	Enhancers	Primary B cells from peripheral blood	blood
16	chr1:174840600-174846200	Enhancers	K562	blood
17	chr1:174840600-174846400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:174840800-174841800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr1:174840800-174841800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr1:174841000-174842200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:174841000-174842400	Enhancers	Primary B cells from cord blood	blood
22	chr1:174841200-174842000	Enhancers	HSMMtube	muscle
23	chr1:174841200-174842200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:174841200-174842200	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr1:174841200-174842200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:174841200-174842400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr1:174841200-174843400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:174841400-174842000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:174841400-174842200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:174841400-174842400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr1:174841400-174843400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr1:174841400-174846400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr1:174841600-174841800	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr1:174841600-174843000	Enhancers	GM12878-XiMat	blood

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