The 2.0 version of rSNPBase

Variant report

Variant rs55774740
Chromosome Location chr1:174942710-174942711
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:174910800-174957000 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:174924200-174967800 Weak transcription Brain Germinal Matrix brain
3 chr1:174924400-174958200 Weak transcription Fetal Brain Male brain
4 chr1:174933000-174953600 Weak transcription Fetal Heart heart
5 chr1:174934600-174943800 Weak transcription Pancreas Pancrea
6 chr1:174934800-174943800 Weak transcription Aorta Aorta
7 chr1:174935000-174943800 Weak transcription Lung lung
8 chr1:174935000-174959000 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr1:174935000-174964000 Strong transcription HUES48 Cell Line embryonic stem cell
10 chr1:174935000-174967000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
11 chr1:174935200-174943400 Weak transcription Brain Angular Gyrus brain
12 chr1:174935200-174943400 Weak transcription Rectal Smooth Muscle rectum
13 chr1:174935200-174943800 Weak transcription Fetal Muscle Leg muscle
14 chr1:174935200-174959000 Weak transcription Stomach Smooth Muscle stomach
15 chr1:174935200-174959600 Weak transcription Esophagus oesophagus
16 chr1:174935400-174943600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr1:174935400-174958400 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:174935600-174943800 Weak transcription Brain Hippocampus Middle brain
19 chr1:174935800-174959600 Weak transcription Fetal Kidney kidney
20 chr1:174936000-174943800 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr1:174936000-174944600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr1:174936000-174945000 Weak transcription NHEK skin
23 chr1:174936000-174946200 Weak transcription Brain Cingulate Gyrus brain
24 chr1:174936000-174950600 Weak transcription Fetal Brain Female brain
25 chr1:174936000-174958600 Weak transcription Brain Substantia Nigra brain
26 chr1:174936600-174943400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
27 chr1:174936600-174945400 Weak transcription Fetal Lung lung
28 chr1:174937000-174943800 Weak transcription Ovary ovary
29 chr1:174937000-174963600 Strong transcription iPS-20b Cell Line embryonic stem cell
30 chr1:174937200-174955000 Strong transcription HUES64 Cell Line embryonic stem cell
31 chr1:174937400-174944200 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr1:174937400-174963600 Strong transcription iPS-18 Cell Line embryonic stem cell
33 chr1:174938000-174963600 Strong transcription H1 Cell Line embryonic stem cell
34 chr1:174938400-174943800 Weak transcription Spleen Spleen
35 chr1:174938400-174945600 Weak transcription A549 lung
36 chr1:174938600-174943400 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr1:174938600-174943400 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr1:174938600-174945200 Weak transcription Adipose Nuclei Adipose
39 chr1:174938600-174952000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr1:174938600-174959000 Weak transcription Small Intestine intestine
41 chr1:174938600-174959400 Weak transcription Psoas Muscle Psoas
42 chr1:174938600-174965200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
43 chr1:174938800-174943400 Weak transcription Rectal Mucosa Donor 31 rectum
44 chr1:174938800-174951600 Weak transcription Left Ventricle heart
45 chr1:174938800-174959000 Weak transcription Thymus Thymus
46 chr1:174939000-174943800 Weak transcription H9 Cell Line embryonic stem cell
47 chr1:174939400-174943600 Weak transcription iPS-15b Cell Line embryonic stem cell
48 chr1:174939400-174943800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
49 chr1:174939400-174943800 Weak transcription Fetal Stomach stomach
50 chr1:174939400-174958800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015