Variant report

Variant	rs7543147
Chromosome Location	chr1:174910326-174910327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174909477..174911004-chr1:174913375..174915350,2	MCF-7	breast:

Extended variants
information (count: 178 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs1012182	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1034462	0.87[CHD][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10494492	0.80[EUR][1000 genomes]
rs1058741	0.82[GIH][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10798324	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10798327	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912843	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912853	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912854	0.90[CEU][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10912855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912857	0.85[EUR][1000 genomes]
rs11800350	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11806066	0.89[ASN][1000 genomes]
rs11809803	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11810508	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063093	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078839	0.80[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12094876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1231826	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1231827	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1231829	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1329281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1540207	0.81[GIH][hapmap]
rs1613634	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1618207	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1618408	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1622802	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs162815	0.82[ASN][1000 genomes]
rs1653630	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1653634	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16847335	0.81[EUR][1000 genomes]
rs16847337	0.81[EUR][1000 genomes]
rs16847624	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17302033	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17302165	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17302367	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1754350	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1754352	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754353	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1754354	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754360	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17842156	0.82[EUR][1000 genomes]
rs17842157	0.81[EUR][1000 genomes]
rs1793292	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793294	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793295	0.83[EUR][1000 genomes]
rs1793298	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793305	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793307	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1793310	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1793313	0.90[ASN][1000 genomes]
rs1793316	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1793318	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1793320	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs1813136	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1883139	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894198	0.97[ASN][1000 genomes]
rs1894199	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1894201	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894680	0.92[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1923818	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs193082	0.82[EUR][1000 genomes]
rs2003378	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146564	0.82[EUR][1000 genomes]
rs2156854	0.88[JPT][hapmap]
rs2157541	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[EUR][1000 genomes]
rs2157567	0.81[ASN][1000 genomes]
rs2163628	0.85[EUR][1000 genomes]
rs2183202	0.89[CEU][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2568096	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2568098	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2760057	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs2860725	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2861005	0.82[EUR][1000 genomes]
rs2861006	0.82[EUR][1000 genomes]
rs2981892	0.97[ASN][1000 genomes]
rs2981893	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981896	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987872	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987873	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987875	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987876	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987880	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3117838	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3117843	0.81[EUR][1000 genomes]
rs3118982	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118986	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118987	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3118988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3118990	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs332767	0.83[EUR][1000 genomes]
rs332768	0.83[EUR][1000 genomes]
rs332779	0.83[EUR][1000 genomes]
rs332781	0.83[EUR][1000 genomes]
rs332782	0.83[EUR][1000 genomes]
rs332786	0.83[EUR][1000 genomes]
rs332793	0.81[EUR][1000 genomes]
rs332800	0.89[CEU][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs332801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333432	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333436	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36127331	0.81[EUR][1000 genomes]
rs3766697	0.81[ASN][1000 genomes]
rs3862941	0.81[EUR][1000 genomes]
rs392307	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs398350	0.83[EUR][1000 genomes]
rs4480415	0.88[JPT][hapmap]
rs459078	0.82[ASN][1000 genomes]
rs460878	0.82[EUR][1000 genomes]
rs464635	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4651205	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4651231	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4651235	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4652797	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55667039	0.81[EUR][1000 genomes]
rs55688014	0.82[EUR][1000 genomes]
rs55774740	0.81[ASN][1000 genomes]
rs55793234	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55844798	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57289077	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58030712	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60482554	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60811893	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6425298	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425300	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425301	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425302	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs6425303	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.97[LWK][hapmap];0.81[TSI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6425304	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6425306	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6670315	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap];0.85[EUR][1000 genomes]
rs6671196	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6671272	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6671782	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6675528	0.85[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.87[LWK][hapmap];0.82[MKK][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66836419	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6684229	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6684515	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6686872	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687616	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690754	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693979	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696465	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6697561	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap]
rs6700953	0.97[ASN][1000 genomes]
rs67054007	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67133776	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67203477	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67903803	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72715281	0.81[EUR][1000 genomes]
rs72715292	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715294	0.84[ASN][1000 genomes]
rs72715300	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717608	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717616	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717617	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72717618	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717630	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717637	0.97[ASN][1000 genomes]
rs72717649	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72717650	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717653	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72717661	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72717670	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74128535	0.81[ASN][1000 genomes]
rs7514183	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7516410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7521109	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7531032	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7547658	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554767	0.81[ASN][1000 genomes]
rs913686	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs913687	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs913688	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9425787	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989424	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1794782	chr1:174900761-174925112	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs7543147	RP11-160H22.5	cis	Thyroid	GTEx
rs7543147	RABGAP1L	cis	Esophagus Muscularis	GTEx
rs7543147	SLC19A2	cis	cerebellum	SCAN
rs7543147	MRPS14	Cis_1M	lymphoblastoid	RTeQTL
rs7543147	RC3H1	cis	parietal	SCAN
rs7543147	MRPS14	cis	lymphoblastoid	seeQTL
rs7543147	TNR	cis	parietal	SCAN
rs7543147	MRPS14	cis	parietal	SCAN

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174874200-174938200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:174876800-174933600	Weak transcription	Aorta	Aorta
3	chr1:174886400-174911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:174898800-174910600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:174899800-174915200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:174900800-174911000	Weak transcription	Brain Angular Gyrus	brain
7	chr1:174901000-174922200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:174903800-174911000	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:174905800-174910600	Weak transcription	HepG2	liver
10	chr1:174905800-174911600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr1:174907200-174910400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:174907600-174910800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:174908000-174910600	Weak transcription	Brain Anterior Caudate	brain
14	chr1:174908000-174911200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:174908000-174911200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:174908000-174911200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr1:174908000-174911600	Weak transcription	Adipose Nuclei	Adipose
18	chr1:174908000-174911800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr1:174908000-174911800	Weak transcription	Fetal Lung	lung
20	chr1:174908000-174914600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr1:174908000-174926600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr1:174908000-174932400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr1:174908200-174910600	Weak transcription	Fetal Kidney	kidney
24	chr1:174908200-174911000	Weak transcription	Liver	Liver
25	chr1:174908200-174911200	Weak transcription	Brain Hippocampus Middle	brain
26	chr1:174908200-174911600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr1:174908200-174911600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr1:174908200-174914000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr1:174908200-174914200	Weak transcription	Small Intestine	intestine
30	chr1:174908200-174914800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr1:174908200-174915200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr1:174908200-174924200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr1:174908400-174912600	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr1:174908600-174910400	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:174908600-174910600	Weak transcription	Primary B cells from cord blood	blood
36	chr1:174908600-174911400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr1:174908600-174911400	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr1:174908600-174911600	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr1:174908600-174927400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr1:174908800-174911400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr1:174908800-174911600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr1:174908800-174932200	Weak transcription	Primary T cells from cord blood	blood
43	chr1:174909200-174911800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr1:174909400-174910400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr1:174909600-174912400	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr1:174909800-174910400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
47	chr1:174909800-174910800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr1:174909800-174913800	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr1:174910000-174910400	Enhancers	H9 Cell Line	embryonic stem cell
50	chr1:174910000-174910400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links