Variant report

Variant	rs4651231
Chromosome Location	chr1:174900761-174900762
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174889741..174892374-chr1:174899175..174902170,2	K562	blood:
2	chr1:174899181..174902088-chr1:174902250..174905277,3	K562	blood:

Variant related genes	Relation type
ENSG00000235869	Chromatin interaction

Extended variants
information (count: 151 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs1012182	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1034462	0.87[CHD][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap]
rs1058741	0.82[GIH][hapmap];0.88[JPT][hapmap]
rs10798324	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs10798327	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912843	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10912853	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912854	0.90[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10912855	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912857	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11800350	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11806066	0.84[ASN][1000 genomes]
rs11809803	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11810508	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12063093	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12078839	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12094876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1231826	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1231827	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1231829	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1329281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1540207	0.81[GIH][hapmap]
rs1613634	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs1618408	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1622802	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs162815	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs1653630	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs1653634	0.83[EUR][1000 genomes]
rs16847624	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17302033	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17302165	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17302367	0.86[JPT][hapmap]
rs1754350	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1754352	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1754353	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1754354	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1754360	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs1793292	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs1793294	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1793295	0.81[EUR][1000 genomes]
rs1793298	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs1793305	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1793307	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs1793310	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs1793313	0.85[ASN][1000 genomes]
rs1793316	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1793318	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1793320	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs1813136	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1883139	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1894198	0.92[ASN][1000 genomes]
rs1894199	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1894201	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1894680	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.90[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1923818	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2003378	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2156854	0.88[JPT][hapmap]
rs2157541	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs2163628	0.83[EUR][1000 genomes]
rs2183202	0.89[CEU][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2760057	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs2771401	0.81[EUR][1000 genomes]
rs2860725	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs2981892	0.92[ASN][1000 genomes]
rs2981893	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2981896	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987872	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987873	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987875	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987876	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987880	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3117838	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs3118982	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3118986	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3118987	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3118988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3118990	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs332767	0.80[EUR][1000 genomes]
rs332768	0.80[EUR][1000 genomes]
rs332779	0.81[EUR][1000 genomes]
rs332781	0.80[EUR][1000 genomes]
rs332782	0.80[EUR][1000 genomes]
rs332786	0.81[EUR][1000 genomes]
rs332800	0.89[CEU][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs332801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs333432	0.81[EUR][1000 genomes]
rs333436	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs392307	0.80[EUR][1000 genomes]
rs398350	0.81[EUR][1000 genomes]
rs4480415	0.88[JPT][hapmap]
rs458242	0.81[EUR][1000 genomes]
rs459078	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs464635	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.82[ASN][1000 genomes]
rs4651205	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4651235	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4652797	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs467437	0.81[EUR][1000 genomes]
rs55793234	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57289077	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58030712	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60482554	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425298	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6425300	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6425301	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6425302	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs6425303	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.90[LWK][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6425304	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6425306	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6670315	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6671196	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6671272	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6671782	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6675528	0.85[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66836419	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684229	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684515	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686872	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6687616	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6690754	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6693979	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6696465	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs6697561	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap]
rs6700953	0.92[ASN][1000 genomes]
rs67054007	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67133776	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67203477	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67903803	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72717608	0.80[EUR][1000 genomes]
rs72717616	0.85[EUR][1000 genomes]
rs72717617	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72717618	0.86[EUR][1000 genomes]
rs72717630	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72717637	0.92[ASN][1000 genomes]
rs72717649	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72717650	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72717653	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717661	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717670	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7514183	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7516410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521109	0.85[EUR][1000 genomes]
rs7531032	0.88[JPT][hapmap]
rs7543147	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7547658	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs913686	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs913687	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs913688	0.86[EUR][1000 genomes]
rs9425787	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs989424	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1794782	chr1:174900761-174925112	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs4651231	SLC19A2	cis	cerebellum	SCAN
rs4651231	MRPS14	Cis_1M	lymphoblastoid	RTeQTL
rs4651231	RC3H1	cis	parietal	SCAN
rs4651231	MRPS14	cis	parietal	SCAN
rs4651231	MRPS14	cis	lymphoblastoid	seeQTL
rs4651231	TNR	cis	parietal	SCAN
rs4651231	RABGAP1L	cis	Esophagus Muscularis	GTEx
rs4651231	RP11-160H22.5	cis	Thyroid	GTEx

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174861400-174902400	Weak transcription	Left Ventricle	heart
2	chr1:174874000-174910000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:174874200-174938200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:174876800-174933600	Weak transcription	Aorta	Aorta
5	chr1:174886000-174907200	Weak transcription	Primary T cells from cord blood	blood
6	chr1:174886400-174911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:174889600-174907400	Weak transcription	Primary B cells from cord blood	blood
8	chr1:174891800-174908600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:174892200-174905000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:174893400-174907600	Weak transcription	GM12878-XiMat	blood
11	chr1:174897400-174903600	Weak transcription	Pancreas	Pancrea
12	chr1:174897400-174910000	Weak transcription	Gastric	stomach
13	chr1:174897800-174907200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:174898800-174910600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:174899400-174900800	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr1:174899600-174901000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr1:174899800-174915200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:174900000-174900800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:174900000-174900800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr1:174900000-174900800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr1:174900000-174900800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:174900000-174901000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr1:174900000-174901600	Enhancers	Brain Hippocampus Middle	brain
24	chr1:174900000-174902200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr1:174900000-174902200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr1:174900200-174901000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr1:174900200-174901000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr1:174900200-174901400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:174900200-174901400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:174900200-174901600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr1:174900200-174901600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:174900400-174900800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:174900400-174900800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr1:174900400-174900800	Enhancers	Brain Angular Gyrus	brain
35	chr1:174900400-174900800	Enhancers	Brain Anterior Caudate	brain
36	chr1:174900400-174900800	Enhancers	Brain Cingulate Gyrus	brain
37	chr1:174900400-174901000	Enhancers	HMEC	breast
38	chr1:174900400-174901000	Enhancers	NHEK	skin
39	chr1:174900400-174901200	Enhancers	Fetal Intestine Small	intestine
40	chr1:174900400-174902600	Enhancers	Brain Substantia Nigra	brain
41	chr1:174900600-174900800	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr1:174900600-174901000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr1:174900600-174901000	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr1:174900600-174901800	Enhancers	Fetal Intestine Large	intestine

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