Variant report

Variant	rs1012182
Chromosome Location	chr1:174911406-174911407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 178 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs1034462	0.87[CHD][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10494492	0.80[EUR][1000 genomes]
rs1058741	0.82[GIH][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10798324	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10798327	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912843	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912853	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912854	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10912855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912857	0.85[EUR][1000 genomes]
rs11800350	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11806066	0.89[ASN][1000 genomes]
rs11809803	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11810508	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063093	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078839	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12094876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1231826	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1231827	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1231829	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1329281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1540207	0.81[GIH][hapmap]
rs1613634	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1618207	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1618408	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1622802	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs162815	0.82[ASN][1000 genomes]
rs1653630	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1653634	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16847335	0.81[EUR][1000 genomes]
rs16847337	0.81[EUR][1000 genomes]
rs16847624	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17302033	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17302165	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17302367	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1754350	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1754352	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754353	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1754354	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754360	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17842156	0.82[EUR][1000 genomes]
rs17842157	0.81[EUR][1000 genomes]
rs1793292	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793294	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793295	0.83[EUR][1000 genomes]
rs1793298	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793305	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793307	0.80[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1793310	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1793313	0.90[ASN][1000 genomes]
rs1793316	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1793318	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1793320	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs1813136	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1883139	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894198	0.97[ASN][1000 genomes]
rs1894199	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1894201	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894680	0.86[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1923818	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs193082	0.82[EUR][1000 genomes]
rs2003378	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146564	0.82[EUR][1000 genomes]
rs2156854	0.88[JPT][hapmap]
rs2157541	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2157567	0.81[ASN][1000 genomes]
rs2163628	0.85[EUR][1000 genomes]
rs2183202	0.89[CEU][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2568096	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2568098	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2760057	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs2860725	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2861005	0.82[EUR][1000 genomes]
rs2861006	0.82[EUR][1000 genomes]
rs2981892	0.97[ASN][1000 genomes]
rs2981893	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981896	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987872	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987873	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987875	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987876	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987880	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3117838	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3117843	0.81[EUR][1000 genomes]
rs3118982	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118986	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118987	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3118988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3118990	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs332767	0.83[EUR][1000 genomes]
rs332768	0.83[EUR][1000 genomes]
rs332779	0.83[EUR][1000 genomes]
rs332781	0.83[EUR][1000 genomes]
rs332782	0.83[EUR][1000 genomes]
rs332786	0.83[EUR][1000 genomes]
rs332793	0.81[EUR][1000 genomes]
rs332800	0.89[CEU][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs332801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333432	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333436	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36127331	0.81[EUR][1000 genomes]
rs3766697	0.81[ASN][1000 genomes]
rs3862941	0.81[EUR][1000 genomes]
rs392307	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs398350	0.83[EUR][1000 genomes]
rs4480415	0.88[JPT][hapmap]
rs459078	0.82[ASN][1000 genomes]
rs460878	0.82[EUR][1000 genomes]
rs464635	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4651205	0.85[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4651231	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4651235	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4652797	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55667039	0.81[EUR][1000 genomes]
rs55688014	0.82[EUR][1000 genomes]
rs55774740	0.81[ASN][1000 genomes]
rs55793234	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55844798	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57289077	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58030712	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60482554	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60811893	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6425298	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425300	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425301	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425302	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs6425303	0.85[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6425304	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6425306	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6670315	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs6671196	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6671272	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6671782	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6675528	0.85[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66836419	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6684229	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6684515	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6686872	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687616	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690754	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693979	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696465	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6697561	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs6700953	0.97[ASN][1000 genomes]
rs67054007	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67133776	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67203477	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67903803	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72715281	0.81[EUR][1000 genomes]
rs72715292	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715294	0.84[ASN][1000 genomes]
rs72715300	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717608	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717616	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717617	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72717618	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717630	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717637	0.97[ASN][1000 genomes]
rs72717649	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72717650	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717653	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72717661	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72717670	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74128535	0.81[ASN][1000 genomes]
rs7514183	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7516410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7521109	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7531032	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7543147	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547658	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554767	0.81[ASN][1000 genomes]
rs913686	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs913687	0.80[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs913688	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9425787	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989424	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1794782	chr1:174900761-174925112	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs1012182	SLC19A2	cis	cerebellum	SCAN
rs1012182	RABGAP1L	cis	Esophagus Muscularis	GTEx
rs1012182	RC3H1	cis	parietal	SCAN
rs1012182	TNR	cis	parietal	SCAN
rs1012182	MRPS14	cis	lymphoblastoid	seeQTL
rs1012182	RABGAP1L	cis	multi-tissue	Pritchard
rs1012182	MRPS14	cis	parietal	SCAN
rs1012182	MRPS14	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174874200-174938200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:174876800-174933600	Weak transcription	Aorta	Aorta
3	chr1:174886400-174911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:174899800-174915200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:174901000-174922200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:174905800-174911600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr1:174908000-174911600	Weak transcription	Adipose Nuclei	Adipose
8	chr1:174908000-174911800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:174908000-174911800	Weak transcription	Fetal Lung	lung
10	chr1:174908000-174914600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:174908000-174926600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:174908000-174932400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr1:174908200-174911600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:174908200-174911600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:174908200-174914000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr1:174908200-174914200	Weak transcription	Small Intestine	intestine
17	chr1:174908200-174914800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr1:174908200-174915200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr1:174908200-174924200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:174908400-174912600	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr1:174908600-174911600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr1:174908600-174927400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr1:174908800-174911600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:174908800-174932200	Weak transcription	Primary T cells from cord blood	blood
25	chr1:174909200-174911800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:174909600-174912400	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr1:174909800-174913800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr1:174910000-174912400	Enhancers	Fetal Intestine Small	intestine
29	chr1:174910000-174916000	Enhancers	Fetal Intestine Large	intestine
30	chr1:174910200-174911800	Weak transcription	Fetal Muscle Leg	muscle
31	chr1:174910200-174911800	Weak transcription	Placenta	Placenta
32	chr1:174910400-174911600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:174910400-174911800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:174910400-174922400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:174910400-174932400	Weak transcription	HSMMtube	muscle
36	chr1:174910600-174911800	Enhancers	Brain Anterior Caudate	brain
37	chr1:174910600-174911800	Enhancers	HepG2	liver
38	chr1:174910600-174912600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr1:174910600-174914800	Weak transcription	K562	blood
40	chr1:174910800-174911800	Weak transcription	Gastric	stomach
41	chr1:174910800-174911800	Weak transcription	Pancreas	Pancrea
42	chr1:174910800-174912600	Enhancers	Brain Substantia Nigra	brain
43	chr1:174910800-174925800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr1:174910800-174957000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr1:174911000-174912600	Enhancers	Brain Angular Gyrus	brain
46	chr1:174911000-174913000	Enhancers	Liver	Liver
47	chr1:174911000-174913400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr1:174911200-174911800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr1:174911200-174911800	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr1:174911200-174912400	Enhancers	Duodenum Mucosa	Duodenum

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