The 2.0 version of rSNPBase

Variant report

Variant rs3766697
Chromosome Location chr1:174960461-174960462
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:174924200-174967800 Weak transcription Brain Germinal Matrix brain
2 chr1:174935000-174964000 Strong transcription HUES48 Cell Line embryonic stem cell
3 chr1:174935000-174967000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr1:174937000-174963600 Strong transcription iPS-20b Cell Line embryonic stem cell
5 chr1:174937400-174963600 Strong transcription iPS-18 Cell Line embryonic stem cell
6 chr1:174938000-174963600 Strong transcription H1 Cell Line embryonic stem cell
7 chr1:174938600-174965200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:174940000-174967600 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr1:174940600-174962000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr1:174940600-174963600 Strong transcription HUES6 Cell Line embryonic stem cell
11 chr1:174941000-174968000 Weak transcription Gastric stomach
12 chr1:174944400-174967800 Weak transcription Aorta Aorta
13 chr1:174944800-174967800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr1:174944800-174968000 Weak transcription Spleen Spleen
15 chr1:174946000-174968000 Weak transcription Lung lung
16 chr1:174949000-174967800 Weak transcription Fetal Stomach stomach
17 chr1:174950600-174964400 Weak transcription NH-A brain
18 chr1:174952200-174967800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr1:174952400-174968000 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr1:174952800-174965800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr1:174954800-174968000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr1:174956000-174967800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
23 chr1:174956200-174967400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr1:174956600-174960600 Strong transcription iPS-15b Cell Line embryonic stem cell
25 chr1:174957200-174963200 Strong transcription HUES64 Cell Line embryonic stem cell
26 chr1:174959000-174965000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr1:174959400-174961600 Weak transcription Small Intestine intestine
28 chr1:174959600-174967400 Weak transcription ES-I3 Cell Line embryonic stem cell
29 chr1:174959800-174960800 Flanking Active TSS HUVEC blood vessel
30 chr1:174960000-174960600 Genic enhancers Fetal Intestine Large intestine
31 chr1:174960000-174961600 Weak transcription Placenta Placenta
32 chr1:174960000-174965800 Weak transcription HSMM muscle
33 chr1:174960000-174967200 Weak transcription Fetal Thymus thymus
34 chr1:174960000-174967200 Weak transcription Left Ventricle heart
35 chr1:174960000-174967800 Weak transcription Fetal Muscle Trunk muscle
36 chr1:174960000-174968000 Weak transcription Esophagus oesophagus
37 chr1:174960200-174960600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr1:174960200-174960600 Weak transcription Primary neutrophils fromperipheralblood blood
39 chr1:174960200-174960600 Enhancers Primary B cells from cord blood blood
40 chr1:174960200-174960600 Enhancers Liver Liver
41 chr1:174960200-174960600 Weak transcription Rectal Mucosa Donor 29 rectum
42 chr1:174960200-174960600 Weak transcription GM12878-XiMat blood
43 chr1:174960200-174960600 Enhancers NHDF-Ad bronchial
44 chr1:174960200-174960800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr1:174960200-174960800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
46 chr1:174960200-174960800 Enhancers Primary T helper cells PMA-I stimulated --
47 chr1:174960200-174960800 Enhancers Hela-S3 cervix
48 chr1:174960200-174961000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
49 chr1:174960200-174961000 Enhancers Fetal Lung lung
50 chr1:174960200-174963200 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015