Variant report

Variant	rs34390425
Chromosome Location	chr1:175003074-175003075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1034462	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1058741	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10912871	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17302165	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17302367	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2157567	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3766697	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55722026	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs55774740	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74128535	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7531032	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7554767	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs34390425	RABGAP1L	cis	Esophagus Muscularis	GTEx
rs34390425	MRPS14	Cis_1M	lymphoblastoid	RTeQTL
rs34390425	RP11-160H22.5	cis	Thyroid	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174993200-175004800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:174993200-175013800	Weak transcription	Spleen	Spleen
3	chr1:174998800-175003800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:174999000-175004000	Weak transcription	HMEC	breast
5	chr1:174999000-175005000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:174999400-175003200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:174999400-175005000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:174999400-175006400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr1:175001800-175003800	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr1:175003000-175005400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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