Variant report

Variant	rs6687616
Chromosome Location	chr1:174809460-174809461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:174798481..174800550-chr1:174807771..174810609,2	MCF-7	breast:
2	chr1:174805015..174806960-chr1:174807361..174809461,2	K562	blood:
3	chr1:174802465..174804337-chr1:174807941..174810779,2	MCF-7	breast:

Extended variants
information (count: 220 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:206)

rs_ID	r²[population]
rs1012182	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1034462	0.81[ASN][1000 genomes]
rs10494492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1058741	0.81[ASN][1000 genomes]
rs10798324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10798327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912828	0.81[EUR][1000 genomes]
rs10912829	0.81[EUR][1000 genomes]
rs10912843	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912853	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912854	0.86[CEU][hapmap]
rs10912855	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11800350	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11806066	0.89[ASN][1000 genomes]
rs11806996	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes]
rs11809803	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11810508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063093	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12065825	0.81[EUR][1000 genomes]
rs12078839	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12094876	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1231826	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1231827	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1231829	0.85[CEU][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1329281	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs149099	0.81[EUR][1000 genomes]
rs1540207	0.82[EUR][1000 genomes]
rs1613634	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1618207	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1618408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1622802	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs162815	0.85[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1653630	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1653634	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16847335	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.85[EUR][1000 genomes]
rs16847337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs16847624	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17302033	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17302165	1.00[CHB][hapmap]
rs17302367	0.81[ASN][1000 genomes]
rs1754350	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1754352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754353	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1754354	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754360	0.85[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs17842156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17842157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1793292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793295	0.85[EUR][1000 genomes]
rs1793298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793305	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793307	0.86[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1793310	0.85[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1793313	0.90[ASN][1000 genomes]
rs1793316	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1793318	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1793320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs1813136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1883139	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894198	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1894199	0.85[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894680	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1923818	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs193082	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs2003378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs2146564	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[YRI][hapmap];0.86[EUR][1000 genomes]
rs2157541	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2157567	0.81[ASN][1000 genomes]
rs2163628	0.87[EUR][1000 genomes]
rs2183202	0.95[CEU][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2568096	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2568098	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2760057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs2760058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs2771401	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs2860725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2861005	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2861006	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2981892	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2981893	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981896	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987875	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987876	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987880	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3117838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3117843	0.83[EUR][1000 genomes]
rs3118982	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3118988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs3118990	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs332763	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs332764	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs332767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs332768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs332772	0.86[CEU][hapmap];0.88[JPT][hapmap]
rs332779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs332781	1.00[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs332782	0.84[EUR][1000 genomes]
rs332784	0.85[CEU][hapmap]
rs332786	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs332793	0.82[EUR][1000 genomes]
rs332797	0.82[EUR][1000 genomes]
rs332798	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs332800	0.94[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs332801	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs332806	0.81[EUR][1000 genomes]
rs333422	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs333423	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs333432	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333436	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs333452	0.82[EUR][1000 genomes]
rs333453	0.82[CEU][hapmap];0.88[JPT][hapmap]
rs333454	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs333471	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs36127331	0.82[EUR][1000 genomes]
rs3766697	0.81[ASN][1000 genomes]
rs3862941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.84[EUR][1000 genomes]
rs392307	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs395109	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs398350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs399530	0.83[EUR][1000 genomes]
rs411665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs4480415	0.82[EUR][1000 genomes]
rs458242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs459078	0.85[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs460878	0.83[EUR][1000 genomes]
rs464540	0.83[EUR][1000 genomes]
rs464635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4651114	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs4651205	0.82[CEU][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs4651231	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4651235	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4652797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs467437	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs55667039	0.85[EUR][1000 genomes]
rs55688014	0.86[EUR][1000 genomes]
rs55774740	0.81[ASN][1000 genomes]
rs55793234	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55844798	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57289077	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58030712	0.95[ASN][1000 genomes]
rs60482554	0.95[ASN][1000 genomes]
rs60811893	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6425298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425300	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425301	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425302	0.86[CEU][hapmap];0.88[JPT][hapmap]
rs6425303	0.81[CEU][hapmap]
rs6425304	0.80[EUR][1000 genomes]
rs6425306	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6667107	0.81[EUR][1000 genomes]
rs6670315	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6671196	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6671272	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6671782	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6675528	0.81[CEU][hapmap]
rs66836419	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6684229	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6684515	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6686872	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689153	0.81[EUR][1000 genomes]
rs6690754	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693979	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6697561	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6700953	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67054007	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67133776	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67203477	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67903803	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72715273	0.83[EUR][1000 genomes]
rs72715281	0.85[EUR][1000 genomes]
rs72715292	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715294	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715300	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717608	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717616	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717617	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72717618	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717630	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717637	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72717649	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72717650	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717653	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72717661	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72717670	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74128535	0.81[ASN][1000 genomes]
rs7516353	0.81[EUR][1000 genomes]
rs7516410	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7521109	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7531032	0.81[ASN][1000 genomes]
rs7543147	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547658	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554767	0.81[ASN][1000 genomes]
rs913686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs913687	0.85[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs913688	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9425787	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989424	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	esv1844208	chr1:174764839-174818547	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1847553	chr1:174764839-174818547	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1815488	chr1:174794144-174818547	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1821003	chr1:174794144-174818547	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1844568	chr1:174794144-174818547	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv872556	chr1:174794420-174819336	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv1844237	chr1:174796670-174818547	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv548217	chr1:174797867-174812326	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv872557	chr1:174800121-174819336	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv872558	chr1:174802731-174818547	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv872559	chr1:174803606-174819336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6687616	MRPS14	Cis_1M	lymphoblastoid	RTeQTL
rs6687616	RP11-160H22.5	cis	Thyroid	GTEx
rs6687616	RABGAP1L	cis	Esophagus Muscularis	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174782200-174813000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr1:174796600-174833400	Weak transcription	Primary B cells from cord blood	blood
3	chr1:174798400-174810800	Weak transcription	GM12878-XiMat	blood
4	chr1:174808200-174809600	Enhancers	HSMMtube	muscle
5	chr1:174808200-174809800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:174808200-174812200	Enhancers	HSMM	muscle
7	chr1:174809000-174811000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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