Variant report

Variant	rs332784
Chromosome Location	chr1:174689065-174689066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174688388..174690592-chr1:174693450..174696212,2	MCF-7	breast:

Extended variants
information (count: 208 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:204)

rs_ID	r²[population]
rs10489264	0.85[CEU][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs10494492	0.85[CEU][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs10798319	0.86[EUR][1000 genomes]
rs10798324	0.85[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10798327	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.81[MKK][hapmap]
rs10912799	0.85[EUR][1000 genomes]
rs10912800	0.86[EUR][1000 genomes]
rs10912817	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10912820	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10912821	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.90[YRI][hapmap];0.83[ASN][1000 genomes]
rs10912822	0.85[CEU][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10912823	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10912828	0.85[CEU][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10912829	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10912843	0.85[CEU][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.81[MKK][hapmap]
rs10912854	0.83[EUR][1000 genomes]
rs11487399	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11802092	0.83[ASN][1000 genomes]
rs11805578	0.87[CEU][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs11806996	0.88[CHD][hapmap];0.87[GIH][hapmap]
rs12062016	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12062170	0.85[EUR][1000 genomes]
rs12062483	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes]
rs12063545	0.83[ASN][1000 genomes]
rs12064743	0.85[EUR][1000 genomes]
rs12065825	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12067463	0.92[ASW][hapmap];0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12071794	0.85[EUR][1000 genomes]
rs12077529	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12078839	0.85[CEU][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap]
rs12079118	0.83[ASN][1000 genomes]
rs12079879	0.85[CEU][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs12080535	1.00[CEU][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12082012	0.85[CEU][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.83[ASN][1000 genomes]
rs12082139	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12083628	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12085652	0.83[ASN][1000 genomes]
rs12086693	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12093966	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs1231829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs1329281	0.88[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1474575	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.90[LWK][hapmap];0.82[MKK][hapmap];0.83[ASN][1000 genomes]
rs149099	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1540207	0.81[LWK][hapmap]
rs1613634	0.85[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];0.95[YRI][hapmap]
rs1618207	0.81[AFR][1000 genomes]
rs1618408	0.89[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1622802	0.85[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs162815	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1653630	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.81[EUR][1000 genomes]
rs1653636	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16847335	0.85[CEU][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16847337	0.85[CEU][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1754352	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap]
rs1754354	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.81[MKK][hapmap]
rs1754360	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17842156	0.85[CEU][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17842157	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1793292	0.85[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1793294	0.85[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1793295	0.80[EUR][1000 genomes]
rs1793298	0.85[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs1793305	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.81[MKK][hapmap]
rs1793307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1793310	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1793313	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1793315	0.87[EUR][1000 genomes]
rs1793316	0.85[CEU][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.81[MKK][hapmap]
rs1793320	0.85[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];0.95[YRI][hapmap];0.81[EUR][1000 genomes]
rs1813135	0.80[EUR][1000 genomes]
rs1813136	0.85[CEU][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs1894198	0.85[EUR][1000 genomes]
rs1894199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs1894201	0.84[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap]
rs1923818	0.85[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs193082	0.85[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2003378	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs2012558	0.83[EUR][1000 genomes]
rs2060158	0.84[CEU][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2092084	0.83[ASN][1000 genomes]
rs2142632	0.85[CEU][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.90[LWK][hapmap];0.82[MKK][hapmap];0.83[ASN][1000 genomes]
rs2146564	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2156853	0.91[ASW][hapmap];0.81[LWK][hapmap];0.89[MKK][hapmap];0.81[EUR][1000 genomes]
rs2156854	0.82[ASW][hapmap];0.82[CHB][hapmap];0.86[MKK][hapmap];0.81[EUR][1000 genomes]
rs2183202	0.80[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs2568096	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2568098	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2760057	0.85[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.96[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2760058	0.85[CEU][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2771401	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.81[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2860725	0.85[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];0.90[YRI][hapmap]
rs2861003	0.83[ASN][1000 genomes]
rs2861005	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2861006	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2981892	0.88[EUR][1000 genomes]
rs2987872	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.81[MKK][hapmap]
rs2987873	0.84[CEU][hapmap];0.88[JPT][hapmap]
rs3117838	0.85[CEU][hapmap];0.88[JPT][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3117843	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3118986	0.84[CEU][hapmap];0.88[JPT][hapmap]
rs3118987	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs3118988	0.84[CEU][hapmap];0.88[JPT][hapmap]
rs3118990	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.81[MKK][hapmap]
rs332763	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs332764	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs332767	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs332768	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.81[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs332772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs332779	0.84[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.96[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs332781	0.85[ASW][hapmap];0.85[CEU][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.89[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs332782	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs332786	0.85[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs332793	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs332797	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs332798	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs332800	0.85[ASW][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs332801	0.85[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs332806	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs333422	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.87[LWK][hapmap];0.88[MKK][hapmap];0.86[YRI][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs333423	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333432	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs333436	0.85[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs333437	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs333438	0.85[CEU][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs333452	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs333453	1.00[CEU][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs333454	0.89[CEU][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs333471	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34409674	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs3862941	0.85[CEU][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3920486	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.90[LWK][hapmap];0.82[MKK][hapmap]
rs392307	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs395109	0.85[CEU][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs398350	0.85[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs399530	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs411665	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4359076	0.89[AFR][1000 genomes]
rs4451598	0.85[CEU][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.90[YRI][hapmap];0.83[ASN][1000 genomes]
rs4562683	0.83[ASN][1000 genomes]
rs458242	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs459078	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs460878	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4615901	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs464540	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs464635	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.82[MKK][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4651103	0.83[ASN][1000 genomes]
rs4651114	0.80[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs4651205	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs4652500	0.85[EUR][1000 genomes]
rs4652652	0.84[CEU][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs4652669	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4652797	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap]
rs467437	0.85[CEU][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.93[LWK][hapmap];0.81[MEX][hapmap];0.90[MKK][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55643907	0.83[ASN][1000 genomes]
rs55667039	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55688014	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55945681	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56213002	0.85[EUR][1000 genomes]
rs56260545	0.83[ASN][1000 genomes]
rs56292878	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61624206	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6425298	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];0.83[MKK][hapmap]
rs6425302	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6425303	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs6665535	0.89[CEU][hapmap];0.81[GIH][hapmap]
rs6667107	0.85[CEU][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6668096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6675528	0.83[EUR][1000 genomes]
rs6677874	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6681970	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes]
rs6682070	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs6687616	0.85[CEU][hapmap]
rs6689153	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6691118	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6692173	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6693979	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.81[MKK][hapmap]
rs6696465	0.85[ASW][hapmap];0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6697561	0.85[CEU][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap]
rs6700953	0.87[EUR][1000 genomes]
rs72715240	0.81[ASN][1000 genomes]
rs72715245	0.83[ASN][1000 genomes]
rs72715253	0.83[ASN][1000 genomes]
rs72715255	0.83[ASN][1000 genomes]
rs72715259	0.83[ASN][1000 genomes]
rs72715260	0.83[ASN][1000 genomes]
rs72715262	0.83[ASN][1000 genomes]
rs72715273	0.88[ASN][1000 genomes]
rs72715281	0.82[EUR][1000 genomes]
rs72717637	0.85[EUR][1000 genomes]
rs7414200	0.85[CEU][hapmap];0.83[ASN][1000 genomes]
rs7514183	0.83[EUR][1000 genomes]
rs7516353	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7522253	0.85[EUR][1000 genomes]
rs7530265	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7536102	0.85[EUR][1000 genomes]
rs7542775	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7547658	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.82[MKK][hapmap]
rs7550472	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs7554728	0.85[EUR][1000 genomes]
rs7554740	0.84[EUR][1000 genomes]
rs909533	0.85[CEU][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.90[LWK][hapmap];0.82[MKK][hapmap]
rs913686	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.82[MKK][hapmap]
rs913687	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.92[TSI][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9730220	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs332784	MRPS14	cis	parietal	SCAN
rs332784	C1orf105	cis	cerebellum	SCAN
rs332784	RABGAP1L	cis	Esophagus Muscularis	GTEx
rs332784	TNR	cis	parietal	SCAN
rs332784	RC3H1	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174678200-174689200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:174678200-174708600	Weak transcription	Primary T cells from cord blood	blood
3	chr1:174678600-174706400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:174682200-174704800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr1:174684200-174689600	Weak transcription	HepG2	liver
6	chr1:174685000-174689800	Weak transcription	Fetal Heart	heart
7	chr1:174687800-174705200	Weak transcription	Primary B cells from cord blood	blood
8	chr1:174689000-174695400	Weak transcription	Fetal Intestine Large	intestine
9	chr1:174689000-174695800	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

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