Variant report

Variant	rs4359076
Chromosome Location	chr1:174732451-174732452
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174731445..174732972-chr1:174968498..174970769,2	K562	blood:

Variant related genes	Relation type
ENSG00000116161	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10798324	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1329281	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1613634	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1618207	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1618408	0.87[AFR][1000 genomes]
rs1622802	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs162815	0.89[AFR][1000 genomes]
rs1653630	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1653634	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1653636	0.83[AFR][1000 genomes]
rs1754360	0.89[AFR][1000 genomes]
rs1793292	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1793294	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1793295	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1793298	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1793307	0.96[AFR][1000 genomes]
rs1793310	0.91[AFR][1000 genomes]
rs1793315	0.80[AFR][1000 genomes]
rs1793320	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1923818	0.91[AFR][1000 genomes]
rs193082	0.91[AFR][1000 genomes]
rs2163628	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2568096	0.91[AFR][1000 genomes]
rs2760057	0.91[AFR][1000 genomes]
rs2771401	0.80[AFR][1000 genomes]
rs3117838	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs332763	0.85[AFR][1000 genomes]
rs332764	0.85[AFR][1000 genomes]
rs332768	0.83[AFR][1000 genomes]
rs332772	0.85[AFR][1000 genomes]
rs332779	0.89[AFR][1000 genomes]
rs332781	0.88[AFR][1000 genomes]
rs332782	0.84[AFR][1000 genomes]
rs332784	0.89[AFR][1000 genomes]
rs332786	0.89[AFR][1000 genomes]
rs332793	0.86[AFR][1000 genomes]
rs332797	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs332798	0.89[AFR][1000 genomes]
rs332800	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs332801	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs333423	0.82[AFR][1000 genomes]
rs333432	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs333436	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs333437	0.82[AFR][1000 genomes]
rs333438	0.83[AFR][1000 genomes]
rs333471	0.89[AFR][1000 genomes]
rs36127331	0.83[AFR][1000 genomes]
rs392307	0.91[AFR][1000 genomes]
rs398350	0.89[AFR][1000 genomes]
rs399530	0.81[AFR][1000 genomes]
rs458242	0.83[AFR][1000 genomes]
rs459078	0.89[AFR][1000 genomes]
rs460878	0.91[AFR][1000 genomes]
rs464635	0.81[AMR][1000 genomes]
rs467437	0.83[AFR][1000 genomes]
rs6696465	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs913688	0.81[AMR][1000 genomes]
rs989424	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv548197	chr1:174731596-174741017	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv548198	chr1:174731596-174800872	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4359076	RABGAP1L	cis	Esophagus Muscularis	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174706200-174734000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr1:174711800-174745600	Weak transcription	Primary B cells from cord blood	blood
3	chr1:174712400-174735000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:174720200-174733000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:174720200-174739000	Weak transcription	GM12878-XiMat	blood
6	chr1:174723200-174739000	Weak transcription	Primary T cells from cord blood	blood
7	chr1:174729400-174733200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:174730400-174733600	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:174730400-174735800	Weak transcription	Gastric	stomach
10	chr1:174731400-174734200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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