The 2.0 version of rSNPBase

Variant report

Variant rs56148594
Chromosome Location chr1:174353070-174353071
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:28 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:174298000-174361800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
2 chr1:174310600-174362400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr1:174315600-174366400 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr1:174318800-174369800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr1:174319200-174362600 Weak transcription Primary T helper cells fromperipheralblood blood
6 chr1:174322400-174363000 Weak transcription Primary hematopoietic stem cells blood
7 chr1:174325800-174382800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr1:174327400-174362000 Weak transcription Primary T cells from cord blood blood
9 chr1:174327600-174362200 Weak transcription Aorta Aorta
10 chr1:174328800-174366400 Weak transcription Primary T helper cells PMA-I stimulated --
11 chr1:174334800-174361800 Weak transcription Left Ventricle heart
12 chr1:174335000-174361800 Weak transcription Primary B cells from cord blood blood
13 chr1:174341200-174353400 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr1:174341800-174372200 Weak transcription Rectal Smooth Muscle rectum
15 chr1:174343000-174362200 Weak transcription Primary T cells fromperipheralblood blood
16 chr1:174344000-174362200 Weak transcription GM12878-XiMat blood
17 chr1:174346800-174362200 Weak transcription Primary B cells from peripheral blood blood
18 chr1:174351000-174369000 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr1:174352000-174366000 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr1:174352200-174366400 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr1:174352600-174353200 Active TSS ES-I3 Cell Line embryonic stem cell
22 chr1:174352600-174353200 Active TSS ES-WA7 Cell Line embryonic stem cell
23 chr1:174352600-174362800 Weak transcription Fetal Intestine Large intestine
24 chr1:174353000-174353200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr1:174353000-174353200 Enhancers HUES6 Cell Line embryonic stem cell
26 chr1:174353000-174353400 Enhancers iPS-15b Cell Line embryonic stem cell
27 chr1:174353000-174353600 Active TSS Fetal Heart heart
28 chr1:174353000-174382600 Weak transcription Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015