The 2.0 version of rSNPBase

Variant report

Variant rs12083814
Chromosome Location chr1:174289055-174289056
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:174270800-174289800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
2 chr1:174276200-174289400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr1:174284600-174294600 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr1:174284800-174294400 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr1:174285200-174290200 Weak transcription Primary T cells fromperipheralblood blood
6 chr1:174285200-174294800 Weak transcription Right Ventricle heart
7 chr1:174285200-174295200 Weak transcription Brain Hippocampus Middle brain
8 chr1:174285400-174289400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr1:174285800-174290000 Weak transcription Skeletal Muscle Female skeletal muscle
10 chr1:174286000-174289400 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr1:174286000-174289600 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:174286000-174296400 Weak transcription Brain Angular Gyrus brain
13 chr1:174287000-174289400 Weak transcription Primary hematopoietic stem cells short term culture blood
14 chr1:174287000-174289400 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr1:174287000-174289800 Weak transcription Aorta Aorta
16 chr1:174287000-174289800 Weak transcription Spleen Spleen
17 chr1:174287000-174290400 Weak transcription Pancreas Pancrea
18 chr1:174287000-174293800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr1:174287000-174296600 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr1:174287200-174289400 Weak transcription Fetal Intestine Small intestine
21 chr1:174287200-174289600 Weak transcription Left Ventricle heart
22 chr1:174287200-174290000 Weak transcription Liver Liver
23 chr1:174287200-174290000 Weak transcription Lung lung
24 chr1:174287200-174294600 Weak transcription Ovary ovary
25 chr1:174287200-174294800 Weak transcription Gastric stomach
26 chr1:174287400-174290000 Weak transcription Adipose Nuclei Adipose
27 chr1:174287600-174289400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr1:174288000-174289200 Weak transcription Primary monocytes fromperipheralblood blood
29 chr1:174288400-174289400 ZNF genes & repeats Primary T helper memory cells from peripheral blood 1 blood
30 chr1:174288400-174289400 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr1:174288400-174290800 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
32 chr1:174288400-174292400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr1:174288600-174289400 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
34 chr1:174288600-174289800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
35 chr1:174288600-174290000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:174288600-174292200 ZNF genes & repeats Primary B cells from cord blood blood
37 chr1:174288600-174292200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr1:174288800-174289200 Weak transcription Primary hematopoietic stem cells blood
39 chr1:174288800-174289400 Strong transcription Primary T killer naive cells fromperipheralblood blood
40 chr1:174288800-174289600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
41 chr1:174289000-174289400 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr1:174289000-174289400 Weak transcription Fetal Heart heart
43 chr1:174289000-174289600 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
44 chr1:174289000-174289600 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
45 chr1:174289000-174290400 ZNF genes & repeats Duodenum Mucosa Duodenum
46 chr1:174289000-174292200 ZNF genes & repeats Primary B cells from peripheral blood blood
47 chr1:174289000-174295400 ZNF genes & repeats GM12878-XiMat blood

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Last update: Aug 31, 2015