The 2.0 version of rSNPBase

Variant report

Variant rs72711501
Chromosome Location chr1:174202219-174202220
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:174176000-174222400 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr1:174176800-174222400 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr1:174177200-174212000 Weak transcription Lung lung
4 chr1:174178600-174212200 Weak transcription Psoas Muscle Psoas
5 chr1:174186600-174216600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr1:174186800-174208000 Weak transcription iPS-18 Cell Line embryonic stem cell
7 chr1:174186800-174212800 Weak transcription Fetal Heart heart
8 chr1:174186800-174213200 Weak transcription Ovary ovary
9 chr1:174186800-174217000 Weak transcription Brain Angular Gyrus brain
10 chr1:174186800-174232000 Weak transcription HSMMtube muscle
11 chr1:174187000-174217000 Weak transcription Pancreas Pancrea
12 chr1:174187400-174208000 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr1:174188600-174213400 Weak transcription Spleen Spleen
14 chr1:174189000-174232000 Weak transcription HSMM muscle
15 chr1:174189200-174216800 Weak transcription Small Intestine intestine
16 chr1:174189400-174203200 Weak transcription Brain Inferior Temporal Lobe brain
17 chr1:174189400-174203400 Weak transcription Brain Hippocampus Middle brain
18 chr1:174189600-174203200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr1:174189600-174215400 Weak transcription NH-A brain
20 chr1:174190200-174204200 Weak transcription Brain Germinal Matrix brain
21 chr1:174191000-174215600 Weak transcription Fetal Brain Male brain
22 chr1:174191400-174215400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr1:174191400-174232000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr1:174191600-174208600 Weak transcription Pancreatic Islets Pancreatic Islet
25 chr1:174191600-174213400 Weak transcription Thymus Thymus
26 chr1:174191600-174232200 Weak transcription Brain Substantia Nigra brain
27 chr1:174191800-174208000 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr1:174191800-174215600 Weak transcription Brain Anterior Caudate brain
29 chr1:174192000-174208400 Weak transcription Fetal Kidney kidney
30 chr1:174192000-174208600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr1:174192000-174215200 Weak transcription HMEC breast
32 chr1:174192000-174219400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
33 chr1:174192200-174208200 Weak transcription HepG2 liver
34 chr1:174192200-174213200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr1:174192400-174224600 Weak transcription Fetal Thymus thymus
36 chr1:174192600-174213600 Weak transcription Fetal Intestine Small intestine
37 chr1:174193200-174212800 Weak transcription Hela-S3 cervix
38 chr1:174197000-174213400 Weak transcription Colonic Mucosa Colon
39 chr1:174197200-174202400 Strong transcription Primary B cells from peripheral blood blood
40 chr1:174198400-174202400 Strong transcription Primary T cells from cord blood blood
41 chr1:174198800-174213400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:174199400-174202400 Strong transcription Primary T helper cells PMA-I stimulated --
43 chr1:174199400-174202400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
44 chr1:174199400-174213400 Weak transcription Gastric stomach
45 chr1:174199600-174202400 Strong transcription Primary T helper naive cells fromperipheralblood blood
46 chr1:174199600-174202400 ZNF genes & repeats GM12878-XiMat blood
47 chr1:174199800-174202400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
48 chr1:174200200-174202400 Strong transcription Primary T cells fromperipheralblood blood
49 chr1:174200200-174202400 Strong transcription Primary T regulatory cells fromperipheralblood blood
50 chr1:174200200-174202400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015