Variant report

Variant	rs11802865
Chromosome Location	chr1:222097741-222097742
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12058838	0.83[EUR][1000 genomes]
rs2153350	0.85[EUR][1000 genomes]
rs2153351	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2257300	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2378500	0.82[EUR][1000 genomes]
rs2790743	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2790753	0.82[EUR][1000 genomes]
rs2800847	0.83[EUR][1000 genomes]
rs2800851	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2800852	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3010843	0.83[EUR][1000 genomes]
rs3124673	0.83[EUR][1000 genomes]
rs6685081	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7554115	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222087600-222099200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr1:222094800-222099200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:222095400-222117800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:222097000-222098200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:222097400-222098000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:222097400-222098000	Enhancers	HSMM	muscle
7	chr1:222097400-222098200	Enhancers	NHDF-Ad	bronchial
8	chr1:222097600-222097800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:222097600-222098000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:222097600-222098000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:222097600-222098000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:222097600-222098000	Enhancers	Left Ventricle	heart
13	chr1:222097600-222098000	Enhancers	Psoas Muscle	Psoas
14	chr1:222097600-222098000	Enhancers	Osteobl	bone
15	chr1:222097600-222098200	Enhancers	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links