Variant report

Variant	rs11803222
Chromosome Location	chr1:70835744-70835745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11801679	1.00[AMR][1000 genomes]
rs11811269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17131260	1.00[EUR][1000 genomes]
rs17131275	1.00[EUR][1000 genomes]
rs17131277	1.00[EUR][1000 genomes]
rs17131278	1.00[EUR][1000 genomes]
rs17131280	1.00[EUR][1000 genomes]
rs17131282	1.00[EUR][1000 genomes]
rs17131286	1.00[EUR][1000 genomes]
rs17131287	1.00[EUR][1000 genomes]
rs17131288	1.00[EUR][1000 genomes]
rs17131289	1.00[EUR][1000 genomes]
rs17131292	1.00[EUR][1000 genomes]
rs36115283	1.00[AMR][1000 genomes]
rs59610555	1.00[AMR][1000 genomes]
rs59856193	1.00[EUR][1000 genomes]
rs61498338	1.00[AMR][1000 genomes]
rs6413468	1.00[EUR][1000 genomes]
rs72914697	1.00[EUR][1000 genomes]
rs72914698	1.00[EUR][1000 genomes]
rs72916616	1.00[EUR][1000 genomes]
rs72916621	1.00[EUR][1000 genomes]
rs72931208	1.00[EUR][1000 genomes]
rs7549628	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999219	chr1:70730556-71014911	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv830137	chr1:70765921-70958718	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70821000-70836400	Weak transcription	Left Ventricle	heart
2	chr1:70821000-70838400	Weak transcription	Lung	lung
3	chr1:70821200-70836800	Weak transcription	Fetal Stomach	stomach
4	chr1:70821200-70841400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:70821400-70838000	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:70821600-70836400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:70821600-70839000	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:70822000-70836400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:70822000-70839400	Weak transcription	Brain Substantia Nigra	brain
10	chr1:70825000-70836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:70827800-70838400	Weak transcription	Fetal Lung	lung
12	chr1:70827800-70839800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr1:70828000-70838200	Weak transcription	Adipose Nuclei	Adipose
14	chr1:70828400-70841000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:70829200-70838000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:70833000-70837400	Weak transcription	Brain Angular Gyrus	brain
17	chr1:70833200-70837000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr1:70833800-70837000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:70834400-70837800	Weak transcription	Ovary	ovary
20	chr1:70834600-70836400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:70835400-70835800	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr1:70835400-70837200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr1:70835400-70837800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:70835400-70838200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr1:70835400-70838400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:70835400-70838400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr1:70835400-70838400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr1:70835400-70838600	Weak transcription	Liver	Liver
29	chr1:70835400-70838800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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