Variant report

Variant	rs59856193
Chromosome Location	chr1:70861039-70861040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:70860587..70864293-chr1:70864361..70869013,4	K562	blood:
2	chr1:70820167..70822627-chr1:70859878..70861873,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197568	Chromatin interaction
ENSG00000118454	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11803222	1.00[EUR][1000 genomes]
rs17131260	1.00[EUR][1000 genomes]
rs17131275	1.00[EUR][1000 genomes]
rs17131277	1.00[EUR][1000 genomes]
rs17131278	1.00[EUR][1000 genomes]
rs17131280	1.00[EUR][1000 genomes]
rs17131282	1.00[EUR][1000 genomes]
rs17131286	1.00[EUR][1000 genomes]
rs17131287	1.00[EUR][1000 genomes]
rs17131288	1.00[EUR][1000 genomes]
rs17131289	1.00[EUR][1000 genomes]
rs17131292	1.00[EUR][1000 genomes]
rs56688715	1.00[AMR][1000 genomes]
rs57480626	0.86[AFR][1000 genomes]
rs57627286	1.00[AMR][1000 genomes]
rs57928672	1.00[AMR][1000 genomes]
rs61084750	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61493071	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6413468	1.00[EUR][1000 genomes]
rs72914697	1.00[EUR][1000 genomes]
rs72914698	1.00[EUR][1000 genomes]
rs72916616	1.00[EUR][1000 genomes]
rs72916621	1.00[EUR][1000 genomes]
rs72921081	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929203	1.00[AMR][1000 genomes]
rs72929206	1.00[AMR][1000 genomes]
rs72929207	1.00[AMR][1000 genomes]
rs72929211	1.00[AMR][1000 genomes]
rs72929214	1.00[AMR][1000 genomes]
rs72929215	1.00[AMR][1000 genomes]
rs72929225	1.00[AMR][1000 genomes]
rs72929226	1.00[AMR][1000 genomes]
rs72929228	1.00[AMR][1000 genomes]
rs72929237	1.00[AMR][1000 genomes]
rs72929241	1.00[AMR][1000 genomes]
rs72929267	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929270	0.86[AFR][1000 genomes]
rs72929272	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929274	0.86[AFR][1000 genomes]
rs72929275	0.86[AFR][1000 genomes]
rs72929277	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929286	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929291	0.86[AFR][1000 genomes]
rs72929299	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72931208	1.00[EUR][1000 genomes]
rs7549628	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999219	chr1:70730556-71014911	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv830137	chr1:70765921-70958718	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	esv1797324	chr1:70858435-70876569	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	n/a
4	nsv871100	chr1:70859397-70928786	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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