Variant report

Variant	rs72929215
Chromosome Location	chr1:70678883-70678884
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:70674826..70679166-chr1:70682889..70688598,11	K562	blood:
2	chr1:70677689..70679328-chr1:70679670..70681328,2	K562	blood:
3	chr1:70676208..70679371-chr1:70691028..70694933,4	K562	blood:
4	chr1:70674179..70677274-chr1:70677921..70681026,3	K562	blood:
5	chr1:70670145..70673365-chr1:70675136..70679229,4	K562	blood:
6	chr1:70677362..70679072-chr1:70694969..70697768,2	K562	blood:
7	chr1:70670740..70673144-chr1:70677061..70678983,2	MCF-7	breast:
8	chr1:70675754..70677274-chr1:70677363..70679421,2	K562	blood:
9	chr1:70677380..70678950-chr1:70685516..70687818,2	MCF-7	breast:
10	chr1:70676847..70678967-chr1:70704287..70707286,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000228988	Chromatin interaction
ENSG00000116754	Chromatin interaction
ENSG00000066557	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs56688715	1.00[AMR][1000 genomes]
rs57627286	1.00[AMR][1000 genomes]
rs57928672	1.00[AMR][1000 genomes]
rs59856193	1.00[AMR][1000 genomes]
rs61084750	1.00[AMR][1000 genomes]
rs61493071	1.00[AMR][1000 genomes]
rs72917819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72917823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72921081	1.00[AMR][1000 genomes]
rs72929203	1.00[AMR][1000 genomes]
rs72929206	1.00[AMR][1000 genomes]
rs72929207	1.00[AMR][1000 genomes]
rs72929211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929214	1.00[AMR][1000 genomes]
rs72929225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929228	1.00[AMR][1000 genomes]
rs72929237	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929241	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929267	1.00[AMR][1000 genomes]
rs72929272	1.00[AMR][1000 genomes]
rs72929277	1.00[AMR][1000 genomes]
rs72929286	1.00[AMR][1000 genomes]
rs72929299	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798518	chr1:70604106-70723347	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv1797140	chr1:70604106-70724622	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv870841	chr1:70612416-70696554	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70672000-70686200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:70672000-70687000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:70672400-70681200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:70672400-70686800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:70672600-70686400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:70672600-70686600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:70672800-70686600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:70673000-70680800	Weak transcription	Esophagus	oesophagus
9	chr1:70673000-70680800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:70673000-70681800	Weak transcription	Fetal Kidney	kidney
11	chr1:70673000-70683400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:70673200-70680800	Weak transcription	Fetal Intestine Large	intestine
13	chr1:70673200-70686200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:70673200-70686200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr1:70673200-70686400	Weak transcription	Brain Substantia Nigra	brain
16	chr1:70673200-70686400	Weak transcription	HSMMtube	muscle
17	chr1:70673200-70686600	Weak transcription	NH-A	brain
18	chr1:70673400-70686200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:70673400-70686200	Weak transcription	HMEC	breast
20	chr1:70673400-70686400	Weak transcription	Fetal Brain Male	brain
21	chr1:70673400-70686600	Weak transcription	A549	lung
22	chr1:70673600-70686400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr1:70673800-70680800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:70673800-70681400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:70673800-70686000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr1:70673800-70686600	Weak transcription	Brain Hippocampus Middle	brain
27	chr1:70673800-70687200	Weak transcription	Small Intestine	intestine
28	chr1:70674200-70681000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:70674200-70681400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr1:70674200-70685800	Weak transcription	Right Ventricle	heart
31	chr1:70674200-70686600	Weak transcription	Brain Angular Gyrus	brain
32	chr1:70674200-70686600	Weak transcription	Brain Anterior Caudate	brain
33	chr1:70674200-70686800	Weak transcription	Aorta	Aorta
34	chr1:70674400-70679600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr1:70674400-70680600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:70674400-70680600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr1:70674400-70680600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr1:70674400-70680800	Weak transcription	Primary T cells from cord blood	blood
39	chr1:70674400-70680800	Weak transcription	Fetal Thymus	thymus
40	chr1:70674400-70680800	Weak transcription	Thymus	Thymus
41	chr1:70674400-70681000	Weak transcription	Fetal Brain Female	brain
42	chr1:70674400-70681000	Weak transcription	Fetal Lung	lung
43	chr1:70674400-70681000	Weak transcription	Fetal Muscle Leg	muscle
44	chr1:70674400-70681200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr1:70674400-70686200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr1:70674400-70686400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr1:70674400-70686600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr1:70674400-70686600	Weak transcription	Colonic Mucosa	Colon
49	chr1:70674400-70686600	Weak transcription	Colon Smooth Muscle	Colon
50	chr1:70674600-70686400	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links