Variant report

Variant	rs72917819
Chromosome Location	chr1:70581424-70581425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs57627286	1.00[AMR][1000 genomes]
rs57928672	1.00[AMR][1000 genomes]
rs61084750	1.00[AMR][1000 genomes]
rs61493071	1.00[AMR][1000 genomes]
rs72917823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929203	1.00[AMR][1000 genomes]
rs72929206	1.00[AMR][1000 genomes]
rs72929207	1.00[AMR][1000 genomes]
rs72929211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929214	1.00[AMR][1000 genomes]
rs72929215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929228	1.00[AMR][1000 genomes]
rs72929237	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929241	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929267	1.00[AMR][1000 genomes]
rs72929272	1.00[AMR][1000 genomes]
rs72929277	1.00[AMR][1000 genomes]
rs72929286	1.00[AMR][1000 genomes]
rs72929299	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70557000-70599600	Weak transcription	Fetal Brain Female	brain
2	chr1:70576400-70582600	Weak transcription	Fetal Lung	lung
3	chr1:70580800-70582400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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