Variant report

Variant	rs11803580
Chromosome Location	chr1:221174921-221174922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11810901	1.00[AMR][1000 genomes]
rs17009368	1.00[AMR][1000 genomes]
rs17009371	1.00[AMR][1000 genomes]
rs17009393	1.00[AMR][1000 genomes]
rs7528553	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221172600-221175400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:221173000-221175200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:221173200-221175000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:221173400-221175000	Enhancers	Spleen	Spleen
5	chr1:221174600-221175000	Enhancers	Right Ventricle	heart
6	chr1:221174600-221175400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr1:221174600-221175400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:221174800-221176400	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links