Variant report

Variant	rs17009368
Chromosome Location	chr1:221261684-221261685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11803580	1.00[AMR][1000 genomes]
rs11810901	1.00[AMR][1000 genomes]
rs17009371	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17009393	1.00[AMR][1000 genomes]
rs7528553	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7542141	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221259800-221262200	Weak transcription	HSMM	muscle
2	chr1:221259800-221262600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:221259800-221262600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:221259800-221270000	Weak transcription	Adipose Nuclei	Adipose
5	chr1:221260800-221264000	Enhancers	NHLF	lung
6	chr1:221261200-221261800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:221261200-221262800	Enhancers	A549	lung
8	chr1:221261200-221263400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:221261200-221263800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:221261200-221263800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:221261200-221264000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:221261200-221264000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:221261200-221264000	Enhancers	NHDF-Ad	bronchial
14	chr1:221261400-221262000	Weak transcription	Hela-S3	cervix
15	chr1:221261400-221262000	Enhancers	HUVEC	blood vessel
16	chr1:221261400-221262000	Enhancers	Osteobl	bone
17	chr1:221261400-221262600	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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